Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0268 ATGGCGAACTCTATAAATTCATTCTCCTCTGCCATTCACTTCCACAACCATCAGTTCAAAGTCATGGCTTCTCACTCCACCCACTTCCAATTTGCCGTTTTTACTGCCATTCTAGTTCTGAAATATTGTTCATTTCCGAGTGTTGGTTCCGCCACTCTGAATCTCGACACAGATAGACAAGCTTTGATTGCAATCAAGTCTGCATTTCAAAATATTCAGCCTCCCAATGCCCTGTCTTCTTGGAATGATCAAACTTCGTCTCCCTGCAACTGGGTCGGCGTTACCTGTGACAGAAATGGAAGTCGAGTGGCTGGCTTGAATCTCACAGGCTTTCAACTCTCAGGCTCCATCGATCCTCATGTCGGGAACCTCTCCTTCCTTCGTTCACTTCAACTCCAGAGCAACCAGTTAACAGGGTCGATCCCAGATCAAATCAGCAATCTTTTTCGCTTAAGAGTTTTGAATATGAGTTTCAACAATTTAGAAGGCCAGCTACCCTCCAACATCAGCAGAATGGTTGATCTCGAGATCCTTGACTTGATGTCCAACAAAATCAATGGGAGACTCCCTGACGAGCTGAGCCGCTTGACTAAGCTTCAAGTTCTGATTTTGGCACAAAACCAACTTTACGGTGGAATCCCACCATCTTTTGGTAATCTTTCTTCGCTTGTTACCATAAATTTGGGCACAAATTCTATTAGTGGCCCCATTCCCAGCCAATTAGCTGACCTTCCAAACTTGAAAGACTTGATTATCACCATCAACAACCTTTCTGGCTCTGTTCCTCCCGGCATTTTCAACATGTCTTCCTTAGTCACTCTGGCCTTGGCTGCCAACCAGCTTTGGGGAACATTCCCCAAGGATGTTGGAGAAAAGCTTCCGAATCTTTTAGTATTCAATTTCTGCTTCAACAAATTTACAGGAACAATTCCTGAGTCGTTGCATAACATCACAAGAATACAAGTCATACGCTTTGCCCACAACTTTCTTGAAGGGATAGTCCCACCAGGTCTCGAAAAGCTTAACGATCTCTCAATGTACAACATCGGATACAACAAGTTTGTGGGTTCAGAAGCAAACGGGGGCCTCAATTTCATCACGTCCTTGACAAACAGCTCACGCCTCGCCTTTCTAGCTCTCGATGGGAACAATTTTGAGGGTGAGATTCCGGATTCCATTGGGAATCTCTCCAAGGATCTTTCTAAGCTGTACATGGGAGAGAATCGTTTTTATGGGAATATACCTACCACGATTTCTAATCTGCAGGGCTTGTCTCTGCTAAACTTGAGCGACAACTCGTTATCAGGTGAAATCCCATCTCAACTTGGCAAATTGGGAAAACTTCAAATGCTTGTTTTGGCAAGGAATCGATTTTCTGGTAGGATTCCAACTTCTTTGGGTGATCTTCGAATGTTAAATCAAATTGATCTATCAGGAAACGATTTGGCTGGAAACATACCCACCTCTTTTGGGAACTTTATGAATCTGCTCTCCTTGGATTTGTCCAAAAATAAGCTCAATGGAAGTATACCAAGAGAGACTCTCAATTTGCCTGGTTTAAGCAAGGTTTTAAATCTATCCAATAACCTTTTCAGTGGGTCTCTTCCTGAAGAAATTGGGTCTCTAGAAAATGTTGTCACCATCGATATCTCTAACAACCATATCTCTGGTAACATTCCTCCTACAATTAGTGGTTGCAAAAGCTTGGAGGTATTGAAAATGGGCAACAATGAATTCTCAGGTCCTATTCCAAGAAGTTTCAAAGATCTTAGAGGCCTCCAGCTTCTAGACCTTTCCTCAAACCATCTTTCAGGCCTCATTCCTAATGAGCTTCAACAATTAAAAGCTCTTCAAACTCTAAATCTCTCTTTCAATGATCTCGAGGGAGTTGTTCCAACAGAGTTAGAAAATATCACTAACCTTTATTTGCAAGGCAATCCAAAGCTTTGTGATGAACGTTTCTCATGTGCAGCGACAAGGACAAAAGAAAAGCTGATTAAAATTGTTGTCATCTCTGCTTTATCAGCATTGTTAGCTATATTTCTTATATTTGGTACTGTGGTTTACTTCATGAGAAGAAAATCAAAGGATGCATCATCATTGTCAACTGAATTGCTGAAGGGGAAGCCTGAAATGATCTCCTATCGTGAGCTCTGTTTGGCAACCGAGAATTTCAGCCCAGAAAATTTGATTGGAAAAGGAAGCTTTGGGACTGTCTACAAAGGCTGTTTAGAACAGGGGACTGCCATTGCAGTTAAGGTCCTCAACACTGAAAGGGCTGGTTCTGTGAGGAGCTTTCTCGCAGAGTGTGAGGCTCTAAGAAACGTGAGACATCGAAATCTTGTTAAACTAATCACATCGTGCTCCAGCATAGACTTCAAACACAAGGAGTTTCTTGCCTTGGTTTATGAGTTTCTCAGCAATGGAAGCTTGGATTCATGGATTCATAAGCATAAACTTCATGCAGATGGAAGTGGACTAAATCTTCTTGAGAGATTGAACATCGCCATCGATGTTGCTTCTGTGTTGGATTATCTCCATAATGGTTACGATGTTCCAATCATTCACTGCGACTTAAAGCCTAGCAACATTATCTTGTCAGAAGACATGACAGCAAAAGTTGGGGATTTTGGGTTAGCTCGTCTACTGATGGAAGGTGAAAGTAACCAATCTTCTTCCATTACTTCCAGTAACGTCTTAAAGGGTTCCATTGGCTATGTTCCTCCAGAATATGGACTGGGAAGAAAGCCTACAACAGCTGGAGATGTGTACAGTTTTGGAGTAACATTGCTGGAGCTTTTTACAGGGAAATGTCCGACTCATGAATGCTTTTCAGGAGAGCTCAGTTTGATCAAATGGGTTCAATTGGCTCATCCAAAGAACATGGATGAAATAGTGGACGCTACACTGTTAGAATCACGTATCAACTTATGCTATCAAGAACAAGAGATTGACCCAACTAAACAGTATGAATGCCTCGTTGATGTCATGGGTGTTGGACTCTCTTGCACTGCAAATTCGCCTGAAAAACGCAGTGGCATGAAAGATGTCTTTTTGAAGCTCAAGATGATCAGGGCCACTCTTATCCATCTCTCAAATGGTAGCTGA 3108 42.18 MANSINSFSSAIHFHNHQFKVMASHSTHFQFAVFTAILVLKYCSFPSVGSATLNLDTDRQALIAIKSAFQNIQPPNALSSWNDQTSSPCNWVGVTCDRNGSRVAGLNLTGFQLSGSIDPHVGNLSFLRSLQLQSNQLTGSIPDQISNLFRLRVLNMSFNNLEGQLPSNISRMVDLEILDLMSNKINGRLPDELSRLTKLQVLILAQNQLYGGIPPSFGNLSSLVTINLGTNSISGPIPSQLADLPNLKDLIITINNLSGSVPPGIFNMSSLVTLALAANQLWGTFPKDVGEKLPNLLVFNFCFNKFTGTIPESLHNITRIQVIRFAHNFLEGIVPPGLEKLNDLSMYNIGYNKFVGSEANGGLNFITSLTNSSRLAFLALDGNNFEGEIPDSIGNLSKDLSKLYMGENRFYGNIPTTISNLQGLSLLNLSDNSLSGEIPSQLGKLGKLQMLVLARNRFSGRIPTSLGDLRMLNQIDLSGNDLAGNIPTSFGNFMNLLSLDLSKNKLNGSIPRETLNLPGLSKVLNLSNNLFSGSLPEEIGSLENVVTIDISNNHISGNIPPTISGCKSLEVLKMGNNEFSGPIPRSFKDLRGLQLLDLSSNHLSGLIPNELQQLKALQTLNLSFNDLEGVVPTELENITNLYLQGNPKLCDERFSCAATRTKEKLIKIVVISALSALLAIFLIFGTVVYFMRRKSKDASSLSTELLKGKPEMISYRELCLATENFSPENLIGKGSFGTVYKGCLEQGTAIAVKVLNTERAGSVRSFLAECEALRNVRHRNLVKLITSCSSIDFKHKEFLALVYEFLSNGSLDSWIHKHKLHADGSGLNLLERLNIAIDVASVLDYLHNGYDVPIIHCDLKPSNIILSEDMTAKVGDFGLARLLMEGESNQSSSITSSNVLKGSIGYVPPEYGLGRKPTTAGDVYSFGVTLLELFTGKCPTHECFSGELSLIKWVQLAHPKNMDEIVDATLLESRINLCYQEQEIDPTKQYECLVDVMGVGLSCTANSPEKRSGMKDVFLKLKMIRATLIHLSNGS 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2156566 2159768 + Lag0004237.1 Lac6g0268 610037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0268 1035 Gene3D Transferase(Phosphotransferase) domain 1 806 1031 - -
Lac6g0268 1035 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 806 1033 - -
Lac6g0268 1035 SUPERFAMILY L domain-like 57 356 - -
Lac6g0268 1035 FunFam LRR receptor-like serine/threonine-protein kinase EFR 696 805 - -
Lac6g0268 1035 SUPERFAMILY L domain-like 400 652 - -
Lac6g0268 1035 ProSitePatterns Protein kinases ATP-binding region signature. 731 753 IPR017441 GO:0005524(InterPro)
Lac6g0268 1035 Gene3D Ribonuclease Inhibitor 216 363 IPR032675 -
Lac6g0268 1035 CDD STKc_IRAK 731 1022 - -
Lac6g0268 1035 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 219 288 - -
Lac6g0268 1035 ProSiteProfiles Protein kinase domain profile. 725 1024 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0268 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 854 866 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g0268 1035 PANTHER OS04G0122200 PROTEIN 70 1023 IPR051809 -
Lac6g0268 1035 Pfam Leucine Rich Repeat 544 566 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine Rich Repeat 175 196 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine Rich Repeat 198 220 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine Rich Repeat 127 148 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine Rich Repeat 472 493 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine Rich Repeat 447 469 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine Rich Repeat 375 396 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine Rich Repeat 522 542 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine Rich Repeat 424 445 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 SUPERFAMILY Protein kinase-like (PK-like) 703 1021 IPR011009 -
Lac6g0268 1035 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 55 216 - -
Lac6g0268 1035 Gene3D Ribonuclease Inhibitor 364 659 IPR032675 -
Lac6g0268 1035 Pfam Protein tyrosine and serine/threonine kinase 729 966 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g0268 1035 SMART serkin_6 725 993 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0268 1035 FunFam LRR receptor-like serine/threonine-protein kinase EFR 361 664 - -
Lac6g0268 1035 Gene3D Ribonuclease Inhibitor 55 215 IPR032675 -
Lac6g0268 1035 Gene3D Phosphorylase Kinase; domain 1 686 805 - -
Lac6g0268 1035 SMART LRR_typ_2 517 542 IPR003591 -
Lac6g0268 1035 SMART LRR_typ_2 421 445 IPR003591 -
Lac6g0268 1035 SMART LRR_typ_2 244 268 IPR003591 -
Lac6g0268 1035 SMART LRR_typ_2 148 172 IPR003591 -
Lac6g0268 1035 SMART LRR_typ_2 614 637 IPR003591 -
Lac6g0268 1035 SMART LRR_typ_2 590 613 IPR003591 -
Lac6g0268 1035 SMART LRR_typ_2 196 219 IPR003591 -
Lac6g0268 1035 SMART LRR_typ_2 124 147 IPR003591 -
Lac6g0268 1035 Pfam Leucine rich repeat 568 627 IPR001611 GO:0005515(InterPro)
Lac6g0268 1035 Pfam Leucine rich repeat N-terminal domain 56 97 IPR013210 -
Lac6g0268 1035 PRINTS Leucine-rich repeat signature 496 509 - -
Lac6g0268 1035 PRINTS Leucine-rich repeat signature 590 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3198 Lac-Chr10:46136006 Lac6g0268 Lac-Chr6:2156566 5.30E-81 dispersed
Lac1g3496 Lac-Chr1:54259471 Lac6g0268 Lac-Chr6:2156566 5.40E-50 dispersed
Lac3g0233 Lac-Chr3:1648800 Lac6g0268 Lac-Chr6:2156566 5.50E-67 dispersed
Lac3g0234 Lac-Chr3:1658379 Lac6g0268 Lac-Chr6:2156566 1.50E-64 dispersed
Lac6g0266 Lac-Chr6:2147232 Lac6g0268 Lac-Chr6:2156566 8.40E-148 dispersed
Lac6g0268 Lac-Chr6:2156566 Lac8g2195 Lac-Chr8:40251030 1.00E-47 dispersed
Lac7g1420 Lac-Chr7:14207314 Lac6g0268 Lac-Chr6:2156566 2.20E-26 dispersed
Lac9g0548 Lac-Chr9:10295928 Lac6g0268 Lac-Chr6:2156566 1.50E-35 dispersed
Lac6g0267 Lac-Chr6:2152335 Lac6g0268 Lac-Chr6:2156566 1.60E-124 tandem
Lac6g0268 Lac-Chr6:2156566 Lac6g0269 Lac-Chr6:2165367 5.80E-136 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86247 PF07714 PK_Tyr_Ser-Thr 1.20E-39 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0268 - - - 0.0