Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0270 ATGGCCGAGACTGAGAACTGTGTCCGTGTCACTCGTGCTTCTAAGAAGAGAGCTGCGGCGGCTGCCATGGTCGAGGATCAACCCGCGAATAAGAAGCGGGTGGTTCTCGGAGAGCTTCCCAACGTTCAGAATGTTTCTGGGTCACTGCCACAGAAGAGGAAGGCCAAGTCTCAGATGACCAAATGCAAGCCTAAGAAGAGGACTAAGATTGGTGTTGCTCCAACGATCAAGACGACTGTTGTTGTTGAAGATAATGATCCTAAGTTGACCGTTGATGATCTTTTGGACGACCCAGAGATGAAGGGGCCTTATTCCTCGGATATTTATGCTTATCTTCGCAAGATGGAGGCGGAACCAAAAAGAAGGCCGATTCCTAATTACATAGAGAAGATTCAGACTGATGTAACTGCCAATATGAGAGGAGTTTTGGTTGATTGGATGGTTGAGGTTGCAGAGGAATACAAGCTCGGTGCGGATACTCTGTATCTATCAATCTCTTACATCGATAGATTCTTATCAATGAACTTCCTCATTAGGCAAAGGCTTCAATTGTTGGGGGTTTCTTCAATGTTGATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAAGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATCCTTAAATCCTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACGTTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAACACCAAATCTGCAGTTGGAATTTCTGGGTTATTACCTTGCTGAGCTTAGCTTGTTGGACTATAACTTTGTCAAGTTCTTGCCTTCTTTGATTGCTGCTTCAGTTGTTTTTCTTGCAAAATTTATCATCCGACCGAAGCTGCATCCTTGGGGTTCAAACTTGCAACAATATACAGGCTACAAGCCAGCTGATTTGAGGCCATGCGTCCTTCTGTTACATGATTTGTATATTGCTAGAAGAGGAGGGTCTCTGATAGCTGTGAGGGAAAAATACAAGCTACATAGGTTCAAATGTGTGGCAATGATGCCTTCACCTCCTGAGATACCATTTTCCTATTTTGAAGAAGCTTAG 1119 43.34 MAETENCVRVTRASKKRAAAAAMVEDQPANKKRVVLGELPNVQNVSGSLPQKRKAKSQMTKCKPKKRTKIGVAPTIKTTVVVEDNDPKLTVDDLLDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVTANMRGVLVDWMVEVAEEYKLGADTLYLSISYIDRFLSMNFLIRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKTPNLQLEFLGYYLAELSLLDYNFVKFLPSLIAASVVFLAKFIIRPKLHPWGSNLQQYTGYKPADLRPCVLLLHDLYIARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2177378 2179201 + Lag0004239.1 Lac6g0270 610039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0270 372 FunFam Mitotic cyclin 6 123 223 - -
Lac6g0270 372 Gene3D - 107 357 - -
Lac6g0270 372 SMART cyclin_7 242 330 IPR013763 -
Lac6g0270 372 SMART cyclin_7 145 229 IPR013763 -
Lac6g0270 372 PIRSF Cyclin_A_B_D_E 2 366 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lac6g0270 372 CDD CYCLIN_AtCycA-like_rpt2 238 352 - -
Lac6g0270 372 Gene3D - 123 236 - -
Lac6g0270 372 SUPERFAMILY Cyclin-like 238 363 IPR036915 -
Lac6g0270 372 Pfam Cyclin, C-terminal domain 238 360 IPR004367 -
Lac6g0270 372 SUPERFAMILY Cyclin-like 96 235 IPR036915 -
Lac6g0270 372 ProSitePatterns Cyclins signature. 140 171 IPR048258 -
Lac6g0270 372 FunFam Cyclin A1 225 357 - -
Lac6g0270 372 PANTHER CYCLINS 78 348 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac6g0270 372 Pfam Cyclin, N-terminal domain 107 235 IPR006671 -
Lac6g0270 372 SMART Cyclin_C_2 238 361 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0270 Lac-Chr6:2177378 Lac8g1821 Lac-Chr8:36495788 9.80E-78 dispersed
Lac12g0195 Lac-Chr12:2145644 Lac6g0270 Lac-Chr6:2177378 2.20E-79 wgd
Lac2g0367 Lac-Chr2:2751758 Lac6g0270 Lac-Chr6:2177378 9.00E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0270 K06627 - csv:101206145 671.003