Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0280 ATGGTACCCCCGTATTCGCTTGATGCTCTGTACTGCTCAGAGGAGCACTGGGAGGAGGAGGAAGAAGAAGGAAGTGGTTTTGACGAACAACATTACACTAACTCAACGAGTGAATCGAATTGTGCGATTGTGGCAGAGCAGGACCTGTTTTGGGAAAACGAAGAACTAATTTCTCTTCTCTCTCGAGAGAAGCCTAATGAACTCTTTAAAAACATTCAGACCGACCCTTCTCTTGCTGCCGCCCGACGAGGCGCCGTCGAGTGGATGCTGAAGGTCAATGCCCATTACTCTTTCTCTGCTCTCACGGCCGTTCTCGCCGTCGATTACTTCGACCGGTTTTTGTCCTGTTTTCATTTTCAAAGAGACAAGCCATGGATGGCTCAGCTTGCTGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACCCAAGTGCCTCTTTTGTTGGACCTACAAGTGGAAGACAGTAGATATCTGTTCGAAGCTAAGACAATTAAGAAGATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCGTTTGTGGATTATATCTCAAGAAGGCTTGGATTCAAGGACCATTTCTGCTGGGAAATTCTTTGGCGGTGTGAACGAGCTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCTATGGAGCCCCACCTCGGCGTTGAATACGATTCCCAGCTTCTTAACATCCTTGGAATCGACAAGGGGAATGTGGAGGAATGCTGTAAACTGATCTCGGATGCATCGAGAAGAAACGGCAACCAATTTAAGAAACGCAAATTCGGGTCGATTCCAGGCAGCCCGAACGGCGTCATTGACGTGTCATTCAGCTCCGATAGCTCGAACGACTCATGGTCGGTGGCCTCGTCGGTTTCATCCTCGCCGGAGCCATTAACGAAGAAGAACAGATCAATGGATCAGCCTCTGGAAATGGCGAACCATTCAACAGCTACAAATTTCCTGGACGTTCCTCGCTAG 1065 48.08 MVPPYSLDALYCSEEHWEEEEEEGSGFDEQHYTNSTSESNCAIVAEQDLFWENEELISLLSREKPNELFKNIQTDPSLAAARRGAVEWMLKVNAHYSFSALTAVLAVDYFDRFLSCFHFQRDKPWMAQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYISRRLGFKDHFCWEILWRCERAILSVILESDFMSFLPSVMATATMLHVFKAMEPHLGVEYDSQLLNILGIDKGNVEECCKLISDASRRNGNQFKKRKFGSIPGSPNGVIDVSFSSDSSNDSWSVASSVSSSPEPLTKKNRSMDQPLEMANHSTATNFLDVPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2263960 2265406 - Lag0004249.1 Lac6g0280 610049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0280 354 Gene3D - 66 182 - -
Lac6g0280 354 SUPERFAMILY Cyclin-like 166 279 IPR036915 -
Lac6g0280 354 Pfam Cyclin, N-terminal domain 68 182 IPR006671 -
Lac6g0280 354 Pfam Cyclin, C-terminal domain 184 284 IPR004367 -
Lac6g0280 354 PANTHER CYCLINS 34 274 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac6g0280 354 FunFam D3-type cyclin 75 182 - -
Lac6g0280 354 CDD CYCLIN_AtCycD-like_rpt2 184 274 - -
Lac6g0280 354 SMART Cyclin_C_2 184 309 IPR004367 -
Lac6g0280 354 SMART cyclin_7 87 175 IPR013763 -
Lac6g0280 354 CDD CYCLIN_AtCycD-like_rpt1 81 179 - -
Lac6g0280 354 Gene3D - 64 272 - -
Lac6g0280 354 SUPERFAMILY Cyclin-like 53 182 IPR036915 -
Lac6g0280 354 ProSitePatterns Cyclins signature. 82 113 IPR048258 -
Lac6g0280 354 MobiDBLite consensus disorder prediction 309 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0280 K14505 - - csv:101205442 519.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1876 Lac-Chr2:19234100 Lac6g0280 Lac-Chr6:2263960 1.20E-18 dispersed
Lac6g0031 Lac-Chr6:306800 Lac6g0280 Lac-Chr6:2263960 4.60E-34 dispersed
Lac6g0280 Lac-Chr6:2263960 Lac6g0985 Lac-Chr6:8916746 1.70E-42 dispersed
Lac1g2603 Lac-Chr1:47369769 Lac6g0280 Lac-Chr6:2263960 3.40E-75 wgd
Lac1g2603 Lac-Chr1:47369769 Lac6g0280 Lac-Chr6:2263960 3.40E-75 wgd
Lac12g0223 Lac-Chr12:2444361 Lac6g0280 Lac-Chr6:2263960 2.50E-67 wgd
Lac2g0355 Lac-Chr2:2675840 Lac6g0280 Lac-Chr6:2263960 9.90E-88 wgd
Lac5g2566 Lac-Chr5:44214406 Lac6g0280 Lac-Chr6:2263960 1.70E-85 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0627 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.4 2.6e-150 528.9
Lac1g1740 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.8 3.7e-96 349.0
Lac2g0052 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.4 1.0e-93 340.9
Lac1g1740 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 5.4e-154 541.2
Lac2g0052 . 11 310 Core Cell Cycle Gene Families AT3G54180 65.8 1.1e-117 420.6
Lac13g0627 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 5.8e-92 335.1
Lac1g1740 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.8 1.4e-123 439.9
Lac2g0052 . 11 310 Core Cell Cycle Gene Families AT2G38620 58.0 3.8e-94 342.0
Lac2g0052 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.0 3.8e-155 545.0
Lac1g1740 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 1.1e-117 420.6
Lac13g0627 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.0 4.5e-92 335.5
Lac2g0052 . 8 307 Core Cell Cycle Gene Families AT1G20930 87.3 8.1e-158 553.9
Lac1g1740 . 1 303 Core Cell Cycle Gene Families AT1G20930 66.8 1.1e-119 427.2
Lac13g0627 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.0 2.6e-95 346.3
Lac9g2934 . 40 555 Core Cell Cycle Gene Families AT5G10270 72.8 1.0e-215 746.9
Lac7g0838 . 101 417 Core Cell Cycle Gene Families AT5G10270 53.5 8.9e-98 355.1
Lac5g2461 . 120 436 Core Cell Cycle Gene Families AT5G10270 55.0 1.5e-97 354.4
Lac3g2293 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.3 4.4e-97 352.8
Lac10g0606 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.5 2.9e-96 350.1
Lac6g2719 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.6 4.9e-96 349.4
Lac2g3025 . 139 455 Core Cell Cycle Gene Families AT5G10270 53.0 1.4e-95 347.8
Lac9g2169 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.9 2.4e-95 347.1
Lac9g2168 . 128 454 Core Cell Cycle Gene Families AT5G10270 50.1 2.3e-93 340.5
Lac10g0120 . 121 439 Core Cell Cycle Gene Families AT5G10270 51.0 2.5e-92 337.0
Lac13g2098 . 148 450 Core Cell Cycle Gene Families AT5G10270 51.7 9.8e-89 325.1
Lac9g2934 . 104 554 Core Cell Cycle Gene Families AT5G64960 71.5 1.8e-177 619.8
Lac5g2461 . 174 436 Core Cell Cycle Gene Families AT5G64960 54.7 1.4e-81 301.2
Lac7g0838 . 155 417 Core Cell Cycle Gene Families AT5G64960 52.5 9.0e-81 298.5
Lac9g2169 . 196 458 Core Cell Cycle Gene Families AT5G64960 53.6 1.2e-80 298.1
Lac10g0606 . 147 409 Core Cell Cycle Gene Families AT5G64960 53.2 1.2e-80 298.1
Lac9g2168 . 182 446 Core Cell Cycle Gene Families AT5G64960 52.9 2.6e-80 297.0
Lac3g2293 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 2.6e-80 297.0
Lac2g3025 . 193 455 Core Cell Cycle Gene Families AT5G64960 53.6 2.2e-79 293.9
Lac6g2719 . 155 419 Core Cell Cycle Gene Families AT5G64960 50.4 1.4e-78 291.2
Lac10g0120 . 175 439 Core Cell Cycle Gene Families AT5G64960 50.4 1.0e-76 285.0
Lac13g2098 . 202 450 Core Cell Cycle Gene Families AT5G64960 52.4 2.4e-73 273.9
Lac3g0442 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.5 2.3e-173 605.9
Lac3g0442 . 12 342 Core Cell Cycle Gene Families AT1G66750 78.3 1.2e-157 553.5
Lac3g0442 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.7 3.5e-174 608.6
Lac1g0984 . 33 464 Core Cell Cycle Gene Families AT5G63610 77.9 5.2e-193 671.4
Lac6g3006 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.0 4.7e-173 605.1
Lac8g1821 . 5 496 Core Cell Cycle Gene Families AT1G44110 60.2 3.1e-150 529.3
Lac2g0633 . 206 470 Core Cell Cycle Gene Families AT1G44110 57.4 9.3e-86 315.1
Lac4g2834 . 226 528 Core Cell Cycle Gene Families AT1G44110 50.5 8.7e-84 308.5
Lac2g0367 . 91 370 Core Cell Cycle Gene Families AT1G44110 52.5 2.5e-83 307.0
Lac6g0270 . 84 372 Core Cell Cycle Gene Families AT1G44110 50.5 4.2e-78 289.7
Lac6g1238 . 315 576 Core Cell Cycle Gene Families AT1G44110 53.1 6.2e-74 275.8
Lac2g0633 . 206 470 Core Cell Cycle Gene Families AT1G77390 54.3 4.4e-77 286.2
Lac2g0367 . 96 368 Core Cell Cycle Gene Families AT1G77390 51.6 4.2e-75 279.6
Lac2g0633 . 16 467 Core Cell Cycle Gene Families AT5G25380 54.3 4.1e-115 412.5
Lac6g1238 . 147 588 Core Cell Cycle Gene Families AT5G25380 50.8 1.7e-100 364.0
Lac4g2834 . 224 528 Core Cell Cycle Gene Families AT5G25380 59.3 1.9e-96 350.5
Lac8g1821 . 216 489 Core Cell Cycle Gene Families AT5G25380 53.5 8.1e-79 292.0
Lac2g0367 . 96 363 Core Cell Cycle Gene Families AT5G25380 52.6 1.4e-75 281.2
Lac2g0633 . 3 422 Core Cell Cycle Gene Families AT5G11300 50.8 1.3e-94 344.4
Lac6g1238 . 190 526 Core Cell Cycle Gene Families AT5G11300 52.3 1.7e-78 290.8
Lac8g1821 . 216 435 Core Cell Cycle Gene Families AT5G11300 55.5 3.0e-67 253.4
Lac2g0367 . 91 307 Core Cell Cycle Gene Families AT5G11300 55.8 3.8e-62 236.5
Lac6g0270 . 91 309 Core Cell Cycle Gene Families AT5G11300 53.0 2.7e-60 230.3
Lac4g2834 . 158 528 Core Cell Cycle Gene Families AT1G15570 57.6 2.4e-115 413.3
Lac2g0367 . 65 360 Core Cell Cycle Gene Families AT1G15570 50.3 3.3e-80 296.6
Lac8g1821 . 217 493 Core Cell Cycle Gene Families AT1G15570 53.2 7.0e-78 288.9
Lac2g0633 . 17 467 Core Cell Cycle Gene Families AT1G80370 50.1 6.4e-103 372.1
Lac8g1821 . 217 494 Core Cell Cycle Gene Families AT1G80370 54.1 4.9e-79 292.7
Lac2g0367 . 91 368 Core Cell Cycle Gene Families AT1G80370 52.2 2.1e-77 287.3
Lac6g0270 . 97 369 Core Cell Cycle Gene Families AT1G80370 53.8 1.1e-75 281.6
Lac6g0270 . 3 371 Core Cell Cycle Gene Families AT5G43080 60.0 1.7e-116 416.8
Lac2g0367 . 1 373 Core Cell Cycle Gene Families AT5G43080 57.1 5.2e-113 405.2
Lac8g1821 . 218 496 Core Cell Cycle Gene Families AT5G43080 51.8 1.4e-78 290.8
Lac2g0633 . 208 467 Core Cell Cycle Gene Families AT5G43080 54.6 1.0e-76 284.6
Lac6g0270 . 1 371 Core Cell Cycle Gene Families AT1G47210 60.5 6.3e-125 444.9
Lac2g0367 . 1 373 Core Cell Cycle Gene Families AT1G47210 54.8 5.0e-114 408.7
Lac12g0195 . 177 441 Core Cell Cycle Gene Families AT1G47210 52.3 3.0e-74 276.6
Lac2g0633 . 208 467 Core Cell Cycle Gene Families AT1G47210 52.7 3.9e-74 276.2
Lac2g0367 . 91 371 Core Cell Cycle Gene Families AT1G47220 59.1 4.6e-95 345.5
Lac6g0270 . 91 371 Core Cell Cycle Gene Families AT1G47220 59.8 1.6e-92 337.0
Lac2g0633 . 208 470 Core Cell Cycle Gene Families AT1G47220 50.9 2.3e-70 263.5
Lac6g0270 . 1 371 Core Cell Cycle Gene Families AT1G47230 58.3 1.8e-119 426.8
Lac2g0367 . 1 374 Core Cell Cycle Gene Families AT1G47230 57.9 1.5e-118 423.7
Lac8g1821 . 219 498 Core Cell Cycle Gene Families AT1G47230 51.1 4.1e-76 282.7
Lac12g0195 . 159 441 Core Cell Cycle Gene Families AT1G47230 51.6 2.7e-75 280.0
Lac2g0633 . 209 467 Core Cell Cycle Gene Families AT1G47230 51.5 2.2e-69 260.4
Lac1g1551 . 1 448 Core Cell Cycle Gene Families AT4G37490 55.2 6.8e-115 411.8
Lac1g1551 . 1 345 Core Cell Cycle Gene Families AT5G06150 53.3 6.6e-81 298.5
Lac9g2754 . 113 305 Core Cell Cycle Gene Families AT5G06150 64.9 2.8e-63 240.0
Lac1g3089 . 354 528 Core Cell Cycle Gene Families AT5G06150 52.6 2.4e-43 173.7
Lac1g1551 . 1 405 Core Cell Cycle Gene Families AT3G11520 57.5 9.4e-108 387.9
Lac9g2754 . 25 366 Core Cell Cycle Gene Families AT3G11520 50.3 5.2e-82 302.4
Lac1g3089 . 355 580 Core Cell Cycle Gene Families AT3G11520 52.2 5.1e-61 232.6
Lac9g2754 . 14 404 Core Cell Cycle Gene Families AT2G26760 55.1 6.6e-109 391.7
Lac1g1551 . 92 441 Core Cell Cycle Gene Families AT2G26760 55.2 2.1e-99 360.1
Lac1g3089 . 208 623 Core Cell Cycle Gene Families AT2G17620 61.0 3.1e-128 456.1
Lac2g0092 . 144 544 Core Cell Cycle Gene Families AT2G17620 53.3 3.1e-107 386.3
Lac1g3089 . 213 580 Core Cell Cycle Gene Families AT4G35620 59.6 1.3e-104 377.5
Lac2g0092 . 144 499 Core Cell Cycle Gene Families AT4G35620 53.0 6.3e-88 322.0
Lac9g2754 . 140 366 Core Cell Cycle Gene Families AT4G35620 50.4 1.0e-53 208.4
Lac2g0092 . 108 542 Core Cell Cycle Gene Families AT1G20610 65.1 1.1e-144 510.8
Lac1g3089 . 185 623 Core Cell Cycle Gene Families AT1G20610 56.3 3.4e-122 436.0
Lac2g0092 . 108 439 Core Cell Cycle Gene Families AT1G76310 64.0 9.5e-104 374.4
Lac1g3089 . 185 520 Core Cell Cycle Gene Families AT1G76310 52.0 1.8e-78 290.4
Lac9g2754 . 138 306 Core Cell Cycle Gene Families AT1G76310 52.6 8.8e-41 165.2
Lac1g1551 . 176 341 Core Cell Cycle Gene Families AT1G76310 51.8 9.7e-40 161.8
Lac6g0031 . 1 331 Core Cell Cycle Gene Families AT1G70210 63.6 2.0e-109 393.3
Lac13g0233 . 1 328 Core Cell Cycle Gene Families AT1G70210 63.4 1.7e-105 380.2
Lac1g2790 . 40 333 Core Cell Cycle Gene Families AT2G22490 54.1 2.1e-80 297.0
Lac6g0280 . 43 318 Core Cell Cycle Gene Families AT4G34160 51.2 1.0e-69 261.5
Lac1g2790 . 58 277 Core Cell Cycle Gene Families AT5G65420 59.9 4.7e-69 258.8
Lac6g0985 . 70 269 Core Cell Cycle Gene Families AT5G65420 55.9 3.0e-60 229.6
Lac1g2790 . 53 232 Core Cell Cycle Gene Families AT5G10440 59.1 1.1e-55 214.2
Lac6g0985 . 65 243 Core Cell Cycle Gene Families AT5G10440 53.9 1.8e-50 196.8
Lac1g2523 . 1 299 Core Cell Cycle Gene Families AT5G27620 60.9 2.6e-97 352.8
Lac10g2066 . 1 87 Core Cell Cycle Gene Families AT2G27960 94.3 3.4e-45 177.9
Lac9g2635 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 3.2e-43 171.4
Lac10g2066 . 1 83 Core Cell Cycle Gene Families AT2G27970 86.7 4.1e-40 161.0
Lac9g2635 . 1 76 Core Cell Cycle Gene Families AT2G27970 93.4 1.2e-39 159.5
Lac13g0777 . 25 1022 Core Cell Cycle Gene Families AT3G12280 73.9 0.0e+00 1426.8
Lac4g2404 . 14 480 Core Cell Cycle Gene Families AT1G02970 60.5 1.1e-156 550.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005600 0 1 3 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 40