Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0280 ATGGTACCCCCGTATTCGCTTGATGCTCTGTACTGCTCAGAGGAGCACTGGGAGGAGGAGGAAGAAGAAGGAAGTGGTTTTGACGAACAACATTACACTAACTCAACGAGTGAATCGAATTGTGCGATTGTGGCAGAGCAGGACCTGTTTTGGGAAAACGAAGAACTAATTTCTCTTCTCTCTCGAGAGAAGCCTAATGAACTCTTTAAAAACATTCAGACCGACCCTTCTCTTGCTGCCGCCCGACGAGGCGCCGTCGAGTGGATGCTGAAGGTCAATGCCCATTACTCTTTCTCTGCTCTCACGGCCGTTCTCGCCGTCGATTACTTCGACCGGTTTTTGTCCTGTTTTCATTTTCAAAGAGACAAGCCATGGATGGCTCAGCTTGCTGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACCCAAGTGCCTCTTTTGTTGGACCTACAAGTGGAAGACAGTAGATATCTGTTCGAAGCTAAGACAATTAAGAAGATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCGTTTGTGGATTATATCTCAAGAAGGCTTGGATTCAAGGACCATTTCTGCTGGGAAATTCTTTGGCGGTGTGAACGAGCTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCTATGGAGCCCCACCTCGGCGTTGAATACGATTCCCAGCTTCTTAACATCCTTGGAATCGACAAGGGGAATGTGGAGGAATGCTGTAAACTGATCTCGGATGCATCGAGAAGAAACGGCAACCAATTTAAGAAACGCAAATTCGGGTCGATTCCAGGCAGCCCGAACGGCGTCATTGACGTGTCATTCAGCTCCGATAGCTCGAACGACTCATGGTCGGTGGCCTCGTCGGTTTCATCCTCGCCGGAGCCATTAACGAAGAAGAACAGATCAATGGATCAGCCTCTGGAAATGGCGAACCATTCAACAGCTACAAATTTCCTGGACGTTCCTCGCTAG 1065 48.08 MVPPYSLDALYCSEEHWEEEEEEGSGFDEQHYTNSTSESNCAIVAEQDLFWENEELISLLSREKPNELFKNIQTDPSLAAARRGAVEWMLKVNAHYSFSALTAVLAVDYFDRFLSCFHFQRDKPWMAQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYISRRLGFKDHFCWEILWRCERAILSVILESDFMSFLPSVMATATMLHVFKAMEPHLGVEYDSQLLNILGIDKGNVEECCKLISDASRRNGNQFKKRKFGSIPGSPNGVIDVSFSSDSSNDSWSVASSVSSSPEPLTKKNRSMDQPLEMANHSTATNFLDVPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2263960 2265406 - Lag0004249.1 Lac6g0280 610049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0280 354 Gene3D - 66 182 - -
Lac6g0280 354 SUPERFAMILY Cyclin-like 166 279 IPR036915 -
Lac6g0280 354 Pfam Cyclin, N-terminal domain 68 182 IPR006671 -
Lac6g0280 354 Pfam Cyclin, C-terminal domain 184 284 IPR004367 -
Lac6g0280 354 PANTHER CYCLINS 34 274 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac6g0280 354 FunFam D3-type cyclin 75 182 - -
Lac6g0280 354 CDD CYCLIN_AtCycD-like_rpt2 184 274 - -
Lac6g0280 354 SMART Cyclin_C_2 184 309 IPR004367 -
Lac6g0280 354 SMART cyclin_7 87 175 IPR013763 -
Lac6g0280 354 CDD CYCLIN_AtCycD-like_rpt1 81 179 - -
Lac6g0280 354 Gene3D - 64 272 - -
Lac6g0280 354 SUPERFAMILY Cyclin-like 53 182 IPR036915 -
Lac6g0280 354 ProSitePatterns Cyclins signature. 82 113 IPR048258 -
Lac6g0280 354 MobiDBLite consensus disorder prediction 309 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1876 Lac-Chr2:19234100 Lac6g0280 Lac-Chr6:2263960 1.20E-18 dispersed
Lac6g0031 Lac-Chr6:306800 Lac6g0280 Lac-Chr6:2263960 4.60E-34 dispersed
Lac6g0280 Lac-Chr6:2263960 Lac6g0985 Lac-Chr6:8916746 1.70E-42 dispersed
Lac1g2603 Lac-Chr1:47369769 Lac6g0280 Lac-Chr6:2263960 3.40E-75 wgd
Lac1g2603 Lac-Chr1:47369769 Lac6g0280 Lac-Chr6:2263960 3.40E-75 wgd
Lac12g0223 Lac-Chr12:2444361 Lac6g0280 Lac-Chr6:2263960 2.50E-67 wgd
Lac2g0355 Lac-Chr2:2675840 Lac6g0280 Lac-Chr6:2263960 9.90E-88 wgd
Lac5g2566 Lac-Chr5:44214406 Lac6g0280 Lac-Chr6:2263960 1.70E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0280 K14505 - csv:101205442 519.235