Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0285 ATGCGAGTCTTCACCATGGGATTTAGCATGAAGGTTCATCAGTTTGCACGTGGCTTTTGGGACGAGCCCTCTCTCTCGCTTGGTTGCAAGCGCTTACGCCCTCTTGCTCCTAAGCTTAACCAACAACAACAACCACCCATTCCCGACACCACTACTACAACCACCACAACCACGACGCTCACCGCCTTCGACCTCAAAACCTTCATCAGACCCGATTGTGGCCCGAGAAAACCCGGCTCCTCTGACCACAAGAAAGACTCTTCTTCACCCAACCAGACAGTAGAGACGCATCCTGGAGGGACGCGATGGAATCCGACGCAAGAACAGATAGGGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCGCAACAGATCGAACAAATCACTGCCCAGCTCGGCAAGTACGGCAAGATCGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGAGAGCGACAGAAACAGAAGCGCAACAGTCTCGGTCTTGCTCACTCCCCTAGAACTCCCCCTCCTCCCATCATCACTGCCCTCCCCTTCGACCCTTCGGGAGAGGAAGATAGTCCGTACAAGAGGAAGTGCATGAGCTGGGGGTTTGAGTGTTTGGTAGAGGATAACAGTATATTGTGTAAAAAGGAAGAGGAAGGTGATAGGACTCTGGAATTATTCCCGTTGCACCCAGAAGGCAGATGA 711 51.2 MRVFTMGFSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLNQQQQPPIPDTTTTTTTTTTLTAFDLKTFIRPDCGPRKPGSSDHKKDSSSPNQTVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPPPPIITALPFDPSGEEDSPYKRKCMSWGFECLVEDNSILCKKEEEGDRTLELFPLHPEGR 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2324237 2325132 + Lag0004254.1 Lac6g0285 610054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0285 236 Gene3D - 100 167 - -
Lac6g0285 236 MobiDBLite consensus disorder prediction 91 107 - -
Lac6g0285 236 FunFam WUSCHEL-related homeobox 4 100 167 - -
Lac6g0285 236 SUPERFAMILY Homeodomain-like 96 166 IPR009057 -
Lac6g0285 236 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Lac6g0285 236 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Lac6g0285 236 MobiDBLite consensus disorder prediction 159 193 - -
Lac6g0285 236 Pfam Homeodomain 101 160 IPR001356 GO:0003677(InterPro)
Lac6g0285 236 PANTHER WUSCHEL-RELATED HOMEOBOX 4 9 236 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Lac6g0285 236 CDD homeodomain 101 162 IPR001356 GO:0003677(InterPro)
Lac6g0285 236 MobiDBLite consensus disorder prediction 76 90 - -
Lac6g0285 236 MobiDBLite consensus disorder prediction 69 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0285 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0285 Lac-Chr6:2324237 Lac7g2699 Lac-Chr7:46038073 8.00E-25 dispersed
Lac6g0285 Lac-Chr6:2324237 Lac10g0287 Lac-Chr10:2174339 4.00E-24 transposed
Lac6g0285 Lac-Chr6:2324237 Lac3g0424 Lac-Chr3:3239069 4.00E-24 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0287 . 40 238 Wox Gene Family AT3G18010 57.5 1.6e-50 197.6
Lac10g2499 . 4 240 Wox Gene Family AT3G03660 50.8 8.8e-45 178.3
Lac5g0057 . 1 276 Wox Gene Family AT4G35550 50.2 5.8e-64 241.9
Lac2g0075 . 1 188 Wox Gene Family AT4G35550 61.5 1.5e-56 217.2
Lac5g0057 . 34 160 Wox Gene Family AT1G20700 58.5 2.1e-37 153.3
Lac6g0285 . 10 167 Wox Gene Family AT1G46480 65.1 7.6e-50 194.5
Lac10g0287 . 40 238 Wox Gene Family AT3G18010 57.5 1.6e-50 197.6
Lac6g0285 . 10 167 Wox Gene Family AT1G46480 65.1 7.6e-50 194.5
Lac10g2499 . 4 240 Wox Gene Family AT3G03660 50.8 8.8e-45 178.3
Lac5g0057 . 1 276 Wox Gene Family AT4G35550 50.2 5.8e-64 241.9
Lac2g0075 . 1 188 Wox Gene Family AT4G35550 61.5 1.5e-56 217.2
Lac5g0057 . 34 160 Wox Gene Family AT1G20700 58.5 2.1e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23976 PF00046 Homeodomain 3.50E-19 CL0123 Lac TF