Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0285 ATGCGAGTCTTCACCATGGGATTTAGCATGAAGGTTCATCAGTTTGCACGTGGCTTTTGGGACGAGCCCTCTCTCTCGCTTGGTTGCAAGCGCTTACGCCCTCTTGCTCCTAAGCTTAACCAACAACAACAACCACCCATTCCCGACACCACTACTACAACCACCACAACCACGACGCTCACCGCCTTCGACCTCAAAACCTTCATCAGACCCGATTGTGGCCCGAGAAAACCCGGCTCCTCTGACCACAAGAAAGACTCTTCTTCACCCAACCAGACAGTAGAGACGCATCCTGGAGGGACGCGATGGAATCCGACGCAAGAACAGATAGGGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCGCAACAGATCGAACAAATCACTGCCCAGCTCGGCAAGTACGGCAAGATCGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGAGAGCGACAGAAACAGAAGCGCAACAGTCTCGGTCTTGCTCACTCCCCTAGAACTCCCCCTCCTCCCATCATCACTGCCCTCCCCTTCGACCCTTCGGGAGAGGAAGATAGTCCGTACAAGAGGAAGTGCATGAGCTGGGGGTTTGAGTGTTTGGTAGAGGATAACAGTATATTGTGTAAAAAGGAAGAGGAAGGTGATAGGACTCTGGAATTATTCCCGTTGCACCCAGAAGGCAGATGA 711 51.2 MRVFTMGFSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLNQQQQPPIPDTTTTTTTTTTLTAFDLKTFIRPDCGPRKPGSSDHKKDSSSPNQTVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPPPPIITALPFDPSGEEDSPYKRKCMSWGFECLVEDNSILCKKEEEGDRTLELFPLHPEGR 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2324237 2325132 + Lag0004254.1 Lac6g0285 610054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0285 236 Gene3D - 100 167 - -
Lac6g0285 236 MobiDBLite consensus disorder prediction 91 107 - -
Lac6g0285 236 FunFam WUSCHEL-related homeobox 4 100 167 - -
Lac6g0285 236 SUPERFAMILY Homeodomain-like 96 166 IPR009057 -
Lac6g0285 236 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Lac6g0285 236 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Lac6g0285 236 MobiDBLite consensus disorder prediction 159 193 - -
Lac6g0285 236 Pfam Homeodomain 101 160 IPR001356 GO:0003677(InterPro)
Lac6g0285 236 PANTHER WUSCHEL-RELATED HOMEOBOX 4 9 236 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Lac6g0285 236 CDD homeodomain 101 162 IPR001356 GO:0003677(InterPro)
Lac6g0285 236 MobiDBLite consensus disorder prediction 76 90 - -
Lac6g0285 236 MobiDBLite consensus disorder prediction 69 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0285 Lac-Chr6:2324237 Lac7g2699 Lac-Chr7:46038073 8.00E-25 dispersed
Lac6g0285 Lac-Chr6:2324237 Lac10g0287 Lac-Chr10:2174339 4.00E-24 transposed
Lac6g0285 Lac-Chr6:2324237 Lac3g0424 Lac-Chr3:3239069 4.00E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23976 PF00046 Homeodomain 3.50E-19 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0285 - - - 0.0