Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0288 ATGTCTAATTATGCCTTCTTGAATGATCAGCTCTCGAGGAAGACCTCCATTTTTGGTTTGCGCTTGTGGGTCGTTCTGGGAATTTGCGTTGGTGCCGCCATTGTTATTGTTCTCTTCCTCATTTCGTTATGGTTCACTTCCAGGCGCAACAGTGCCTCTAAATCTAAACCCTCTCTGAACCCCACTATCCCAAATGAGTCCAAGGAAATCCAGGAAATACGAATCGACCCTTCTCGGAACCCGACTCATTCTGACCCAAAAGTTCAATTGGCTTCTACCCCTGAGCCCTTGCCGGAGGCAGAGCCTTTAGCGACGCTGCTTCAGACGGAAGAAGGGAGCCCAGCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCGTACCCGGAGAGAGGCGGCGGTTCGTCCCACGGTAGTGGAGAGGCTCGGTCCGGCGATCAGGCGCCGGTGGCTGTGCCGGAGGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAGTATTCTACTAATTGTTTTGCGGATGAAAATGTAATTGGTGAGGGCGGATATGGCATTGTGTACCGTGGTGTTCTGGAGGACAACACTGTCGTAGCTATCAAAAATTTGCTCAATAACAGGGGACAGGCTGAGAAGGAGTTTAAGGTTGAAGTGGAAGCAATTGGACGCGTTCGGCACAAGAATCTGGTGCGTTTGCTTGGCTATTGTGCTGAAGGAGCTCATAGGATGCTTGTATATGAGTACATTGATAACGGAAACTTGGAACAGTGGCTTCATGGAGAAGTCGGGCCTTGTAGCCCTCTCACATGGGACATTCGGATGAATATAATAGTTGGAACAGCAAAAGGGTTAACGTACCTCCATGAGGGGCTTGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGACAAGCAGTGGAATCCAAAGGTCTCTGACTTTGGCCTAGCAAAGCTTCTTGGATCAGAGAGGAGTTATGTAACAACTCGTGTGATGGGAACTTTCGGATATGTAGCTCCAGAATATGCTAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGCATCCTCATTATGGAGATAATTTCCGGGAGAAATCCAGTAGATTATAGCCGTCCTTCAGGAGAGGTTAATCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAATGCAGAGGGAGTTCTGGATCCTAAGTTGCCCGAGAAGCCCTCAACAAGGGCGCTTAAGCGTGCTCTGTTAGTAGCTTTACGGTGCGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCACGTAATTCATATGCTTGAAGCAGATGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGGGAACCAGGACGATCACTGCTCAAGGAAAAGCTCATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGTGGATATGAAAGTGGTGCGACTCAAGCAAGCCGACATCTATGGAGAAAGCAAGAACTTGAAGAACAACAGCCTCGCGAACCTCACACTTTAAGGTGA 1566 47.57 MSNYAFLNDQLSRKTSIFGLRLWVVLGICVGAAIVIVLFLISLWFTSRRNSASKSKPSLNPTIPNESKEIQEIRIDPSRNPTHSDPKVQLASTPEPLPEAEPLATLLQTEEGSPASGRHRIHIEIGKDHRISYPERGGGSSHGSGEARSGDQAPVAVPEVSHLGWGHWYTLRELEYSTNCFADENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYIDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIISGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREPGRSLLKEKLMERLVSESGESSGYESGATQASRHLWRKQELEEQQPREPHTLR 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2359709 2362189 + Lag0004257.1 Lac6g0288 610057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0288 521 ProSiteProfiles Protein kinase domain profile. 181 439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0288 521 MobiDBLite consensus disorder prediction 487 501 - -
Lac6g0288 521 MobiDBLite consensus disorder prediction 51 95 - -
Lac6g0288 521 SUPERFAMILY Protein kinase-like (PK-like) 162 453 IPR011009 -
Lac6g0288 521 PANTHER OS01G0323000 PROTEIN 6 488 IPR052232 -
Lac6g0288 521 Pfam Protein kinase domain 183 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0288 521 FunFam Putative receptor-like serine/threonine-protein kinase 257 467 - -
Lac6g0288 521 MobiDBLite consensus disorder prediction 51 67 - -
Lac6g0288 521 CDD STKc_IRAK 187 453 - -
Lac6g0288 521 FunFam Probable serine/threonine-protein kinase At1g01540 161 256 - -
Lac6g0288 521 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524(InterPro)
Lac6g0288 521 SMART serkin_6 181 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0288 521 Gene3D Transferase(Phosphotransferase) domain 1 257 463 - -
Lac6g0288 521 Gene3D Phosphorylase Kinase; domain 1 156 256 - -
Lac6g0288 521 MobiDBLite consensus disorder prediction 129 154 - -
Lac6g0288 521 MobiDBLite consensus disorder prediction 482 521 - -
Lac6g0288 521 MobiDBLite consensus disorder prediction 503 521 - -
Lac6g0288 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0877 Lac-Chr12:9089906 Lac6g0288 Lac-Chr6:2359709 6.60E-141 dispersed
Lac5g2973 Lac-Chr5:47742212 Lac6g0288 Lac-Chr6:2359709 7.70E-72 dispersed
Lac6g0288 Lac-Chr6:2359709 Lac7g0210 Lac-Chr7:1667519 2.40E-170 dispersed
Lac1g2612 Lac-Chr1:47482504 Lac6g0288 Lac-Chr6:2359709 6.50E-29 wgd
Lac1g2579 Lac-Chr1:47136939 Lac6g0288 Lac-Chr6:2359709 1.10E-199 wgd
Lac2g0452 Lac-Chr2:3325129 Lac6g0288 Lac-Chr6:2359709 1.80E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86249 PF00069 Pkinase 2.50E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0288 - - - 0.0