Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0294 | ATGGATGTTGACCATGTAAAGCCTGGGGATCAGATGGATATTCTGACTATGATTCAGCAGATGGGAAAATTTCCTGAGTTTTTTGAATTTACCGAACTGCCACTGCCACACTCGGCTTTTGCTTTTGGTAGTTCCAATATTCCTGCCACTTCTCTCATGGAAAACCCAAATCCCACTTTTCCTTCTTCTAACGCCGCTAACCCTGTTGGACCGCCGTGTCTTCTGCCGTATTCCGCCGCTGGCCGGTGGAGAACCCATGTTGCCGCTACCGGAAATGCCGACACGAAGGAGAATTCAATGGCGGCGATGAGGGAGATGATCTACAGGATAGCGGCGATGCAGCCGATACAGATAGACCCAGAATCGGTAAAAGCACCGAAACGGCGGAACGTGAAGATCTCAAACGACCCACAGAGCGTAGCGGCGAGACATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATTCACTACGTCAAGTTCTTGAAAAACCAAGTCCAATCCCTCGAAATAGCCGCCGCCGCCAATACCAACCGCCCCTCCGCCTTCGGCTTTCCGGCCGCCGCCGGGATTAATTACAAACACTTCCGAAGTGGGCACGAGCACGTGATCAATGAATGA | 681 | 51.25 | MDVDHVKPGDQMDILTMIQQMGKFPEFFEFTELPLPHSAFAFGSSNIPATSLMENPNPTFPSSNAANPVGPPCLLPYSAAGRWRTHVAATGNADTKENSMAAMREMIYRIAAMQPIQIDPESVKAPKRRNVKISNDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLEIAAAANTNRPSAFGFPAAAGINYKHFRSGHEHVINE | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2407016 | 2408112 | + | Lag0004263.1 | Lac6g0294 | 610063 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0294 | 226 | FunFam | BHLH transcription factor | 136 | 200 | - | - | |
| Lac6g0294 | 226 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 138 | 191 | IPR036638 | GO:0046983(InterPro) | |
| Lac6g0294 | 226 | Gene3D | - | 136 | 200 | IPR036638 | GO:0046983(InterPro) | |
| Lac6g0294 | 226 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 63 | 198 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0294 | 226 | SMART | finulus | 139 | 188 | IPR011598 | GO:0046983(InterPro) | |
| Lac6g0294 | 226 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 133 | 182 | IPR011598 | GO:0046983(InterPro) | |
| Lac6g0294 | 226 | Pfam | Helix-loop-helix DNA-binding domain | 142 | 183 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g2957 | Lac-Chr4:47881544 | Lac6g0294 | Lac-Chr6:2407016 | 2.20E-29 | dispersed | |
| Lac6g0294 | Lac-Chr6:2407016 | Lac9g0990 | Lac-Chr9:22954940 | 2.80E-43 | dispersed | |
| Lac6g0287 | Lac-Chr6:2351705 | Lac6g0294 | Lac-Chr6:2407016 | 3.20E-07 | proximal | |
| Lac1g2390 | Lac-Chr1:45228306 | Lac6g0294 | Lac-Chr6:2407016 | 4.20E-35 | transposed | |
| Lac2g0328 | Lac-Chr2:2450276 | Lac6g0294 | Lac-Chr6:2407016 | 1.20E-52 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23979 | PF00010 | HLH | 1.80E-06 | No_clan | Lac | TF |
Pathway information