Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0298 | ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGTAAACGGCGGAGGAGGTGGAAGGCCTCCGGCGAACTATCCATTAGCGCGGCAATCATCGATCTACTCGCTGACCTTCGATGAATTTCAGAGTATGGGGAGTATAGGCAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAAAGAAGGGACTGGTACTGTTGGTGGTAGTGGTGGGTATTTGCAGAGACAGGGCTCTTTGACGCTGCCTCGTACACTCAGCCAGAAGAAGGTCGATGAGGTGTGGAAGGACATAATCAATGAACATGGTGGTGCTAAAGATGGGAATACTGTTGCTTCTAATTTGCAACAGAGGCAGCAGACTCTTGGGGAGATGACACTTGAAGAGTTTTTGTTCAGAGCTGGAGTTGTGAGAGAGGATACTCAAGTGACTGGAAACGCCAACAATGGAGGATTCTTTGGCAATAACACTGGTTTTGGAATTGGTTTCCAGCGACAGGGTAAGACTCCTGAGAATAACAATTACATTCCGATTCAATCGTCGAATTTATCATTGAATGTCAATGGAGTTAGAGCACATCAGCCGCAGCCAATATTCCCAAAGCAGCCTACTGTGACGTATGGATCTCAGTTGCCTTTACCCAGTGATGGTCAGCTAGCTAGTCCAGGAATTAGAGGTGGGATTATGGGGATTGGAGATCAAGCGTCGAGTACAAATCTGTTGCAAGGCTCTGCCCTGCAGGGTGGAAGGATGGGAGTGGTTAATTTAGCAGCTGGGCCGATAACTGTTGCAACAGGATCGCCAGGGAACCAACTATCATCTGATGGGATCGGAAAGAGCAATGGTGATACCTCGTCCGTGTCTCCGGTGCCGTACGCACTTAATGGTGGAATCAGAGGGAGGAGAAGTAATGGGACTGTTGACAAAGTTGTCGAGAGGAGGCAGCGTAGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCGCGGGCTCGAAAGCAGGCTTACACGATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGTAATCATGGAAATGCAGAAGAACCGGGCATTGGAAATAATGGATAAGCAACAAGGAATCAAGAAGCGATGCTTAAGACGAACGCAGACTGGTCCATGGATGTCTTGCTTGCAGGGTGTCGTGTCGTATTTGCTTCGAAATGGGATCATCAGGAGTTCGGTAGCTTTTGAACGAAAGCAAAGCGCATGTTGTTCGATTCGTTTTCTGGAAATACTACTTCATACAGCTCCTCCACCACCTTCCTGCCATCAAGAGAGAAATAAGTTTTTTGTGGCATTTCCTGATATGGCCCTGCTGCTGCTGTGGCTGTGA | 1461 | 47.64 | MNFKDFGNDPSAVNGGGGGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAAAAAAAAKEGTGTVGGSGGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHGGAKDGNTVASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTGNANNGGFFGNNTGFGIGFQRQGKTPENNNYIPIQSSNLSLNVNGVRAHQPQPIFPKQPTVTYGSQLPLPSDGQLASPGIRGGIMGIGDQASSTNLLQGSALQGGRMGVVNLAAGPITVATGSPGNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGTVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAVIMEMQKNRALEIMDKQQGIKKRCLRRTQTGPWMSCLQGVVSYLLRNGIIRSSVAFERKQSACCSIRFLEILLHTAPPPPSCHQERNKFFVAFPDMALLLLWL | 486 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2420220 | 2423393 | - | Lag0004267.1 | Lac6g0298 | 610067 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0298 | 486 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 341 | 356 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0298 | 486 | Pfam | bZIP transcription factor | 338 | 388 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0298 | 486 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 29 | 415 | IPR043452 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro) | |
Lac6g0298 | 486 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 336 | 381 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0298 | 486 | FunFam | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | 336 | 393 | - | - | |
Lac6g0298 | 486 | Coils | Coil | 354 | 391 | - | - | |
Lac6g0298 | 486 | Gene3D | - | 336 | 392 | - | - | |
Lac6g0298 | 486 | CDD | bZIP_plant_BZIP46 | 338 | 390 | - | - | |
Lac6g0298 | 486 | SUPERFAMILY | Leucine zipper domain | 338 | 386 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0298 | 486 | SMART | brlzneu | 334 | 399 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0298 | 486 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac6g0298 | Lac-Chr6:2420220 | Lac9g2706 | Lac-Chr9:45338846 | 1.80E-26 | dispersed | |
Lac5g0085 | Lac-Chr5:717123 | Lac6g0298 | Lac-Chr6:2420220 | 2.80E-10 | transposed | |
Lac8g1675 | Lac-Chr8:34869877 | Lac6g0298 | Lac-Chr6:2420220 | 2.20E-08 | transposed | |
Lac8g2256 | Lac-Chr8:40820319 | Lac6g0298 | Lac-Chr6:2420220 | 7.10E-30 | transposed | |
Lac4g1645 | Lac-Chr4:35181774 | Lac6g0298 | Lac-Chr6:2420220 | 8.20E-94 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23980 | PF00170 | bZIP_1 | 8.80E-13 | CL0018 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g0298 | K14432 | - | csv:101223043 | 688.337 |