Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0298 ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGTAAACGGCGGAGGAGGTGGAAGGCCTCCGGCGAACTATCCATTAGCGCGGCAATCATCGATCTACTCGCTGACCTTCGATGAATTTCAGAGTATGGGGAGTATAGGCAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAAAGAAGGGACTGGTACTGTTGGTGGTAGTGGTGGGTATTTGCAGAGACAGGGCTCTTTGACGCTGCCTCGTACACTCAGCCAGAAGAAGGTCGATGAGGTGTGGAAGGACATAATCAATGAACATGGTGGTGCTAAAGATGGGAATACTGTTGCTTCTAATTTGCAACAGAGGCAGCAGACTCTTGGGGAGATGACACTTGAAGAGTTTTTGTTCAGAGCTGGAGTTGTGAGAGAGGATACTCAAGTGACTGGAAACGCCAACAATGGAGGATTCTTTGGCAATAACACTGGTTTTGGAATTGGTTTCCAGCGACAGGGTAAGACTCCTGAGAATAACAATTACATTCCGATTCAATCGTCGAATTTATCATTGAATGTCAATGGAGTTAGAGCACATCAGCCGCAGCCAATATTCCCAAAGCAGCCTACTGTGACGTATGGATCTCAGTTGCCTTTACCCAGTGATGGTCAGCTAGCTAGTCCAGGAATTAGAGGTGGGATTATGGGGATTGGAGATCAAGCGTCGAGTACAAATCTGTTGCAAGGCTCTGCCCTGCAGGGTGGAAGGATGGGAGTGGTTAATTTAGCAGCTGGGCCGATAACTGTTGCAACAGGATCGCCAGGGAACCAACTATCATCTGATGGGATCGGAAAGAGCAATGGTGATACCTCGTCCGTGTCTCCGGTGCCGTACGCACTTAATGGTGGAATCAGAGGGAGGAGAAGTAATGGGACTGTTGACAAAGTTGTCGAGAGGAGGCAGCGTAGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCGCGGGCTCGAAAGCAGGCTTACACGATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGTAATCATGGAAATGCAGAAGAACCGGGCATTGGAAATAATGGATAAGCAACAAGGAATCAAGAAGCGATGCTTAAGACGAACGCAGACTGGTCCATGGATGTCTTGCTTGCAGGGTGTCGTGTCGTATTTGCTTCGAAATGGGATCATCAGGAGTTCGGTAGCTTTTGAACGAAAGCAAAGCGCATGTTGTTCGATTCGTTTTCTGGAAATACTACTTCATACAGCTCCTCCACCACCTTCCTGCCATCAAGAGAGAAATAAGTTTTTTGTGGCATTTCCTGATATGGCCCTGCTGCTGCTGTGGCTGTGA 1461 47.64 MNFKDFGNDPSAVNGGGGGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAAAAAAAAAKEGTGTVGGSGGYLQRQGSLTLPRTLSQKKVDEVWKDIINEHGGAKDGNTVASNLQQRQQTLGEMTLEEFLFRAGVVREDTQVTGNANNGGFFGNNTGFGIGFQRQGKTPENNNYIPIQSSNLSLNVNGVRAHQPQPIFPKQPTVTYGSQLPLPSDGQLASPGIRGGIMGIGDQASSTNLLQGSALQGGRMGVVNLAAGPITVATGSPGNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGTVDKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQAVIMEMQKNRALEIMDKQQGIKKRCLRRTQTGPWMSCLQGVVSYLLRNGIIRSSVAFERKQSACCSIRFLEILLHTAPPPPSCHQERNKFFVAFPDMALLLLWL 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2420220 2423393 - Lag0004267.1 Lac6g0298 610067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0298 486 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 341 356 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0298 486 Pfam bZIP transcription factor 338 388 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0298 486 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 415 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Lac6g0298 486 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 336 381 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0298 486 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 336 393 - -
Lac6g0298 486 Coils Coil 354 391 - -
Lac6g0298 486 Gene3D - 336 392 - -
Lac6g0298 486 CDD bZIP_plant_BZIP46 338 390 - -
Lac6g0298 486 SUPERFAMILY Leucine zipper domain 338 386 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0298 486 SMART brlzneu 334 399 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0298 486 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0298 Lac-Chr6:2420220 Lac9g2706 Lac-Chr9:45338846 1.80E-26 dispersed
Lac5g0085 Lac-Chr5:717123 Lac6g0298 Lac-Chr6:2420220 2.80E-10 transposed
Lac8g1675 Lac-Chr8:34869877 Lac6g0298 Lac-Chr6:2420220 2.20E-08 transposed
Lac8g2256 Lac-Chr8:40820319 Lac6g0298 Lac-Chr6:2420220 7.10E-30 transposed
Lac4g1645 Lac-Chr4:35181774 Lac6g0298 Lac-Chr6:2420220 8.20E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23980 PF00170 bZIP_1 8.80E-13 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0298 K14432 - csv:101223043 688.337