Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0317 ATGGACGGCGGTGGTGATGGTACTGTCAGGCTTGGGGCTCTGAACTTGAAGCCGGATCGGAGCGGCTTTGATTTGGGCCCTGATGTGTCTGTTTCGTCTCCGGTGACCAGGCAGAAAGCCGCTGCTGCTAAACAGTTTATTGAGAATCATTACAAGAACTATCTCCAAGGTCTGCAGGATCGCAAGGAGAGACGGAGGACGCTTCAACGAAGAGTGCAAGAAGCTCAGATGTCAGCTGAAGAACAAGAAGAGATGCTGAGGAATTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATTGATGACTTTGAACAATTAACAGTTATCGGTAAAGGTGCATTCGGTGAGGTTAGATTATGTCGTGCAAAAGGAACTGGGGAAATATTTGCCATGAAGAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTCGGTGCATTGTAAAACTCTTCTATTCTTTTCAAGATTCTGAATTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCAGAGGATGTTGCTCGCTTTTACATAGCAGAAAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACCTGATACTAGATAAAAATGGTCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGATAAGTATTCGAGTATACTTTTGAATGACGAAGATTTAACAGCCCAGCAAGCCAAAAGTGAAGGTCAAGGCCATACTGACTCTAATGGATCCCACTGGATGATGCCAAAAGAACAAATCCAACAGTGGAAGCGTAATCGTCGAGCATTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTATTGCTTAAGAAAGGATATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACTTTCCGCAAGATTATAAATTGGAGAACCTGCCTGAAATTTCCCGAGGAACCAAAAATCTCAGAGGAAGCTAAGGATCTGATCAGCCACTTGCTATGTGATGTTGAAATGAGGTTGGGAACACGAGGAATAGAAGAAATTAAGGCACATCCATGGTTCAAAGGCATTCAATGGGATAAGCTATATGAAATGGAAGCTGCATACAAACCAACTGTCACTGGAGAACTGGACACTCAGAACTTTGAGAAGTTTCCTGAAGTTCAAGACCCTCCATCAGAAATGCCAACTGTTGGACCTTGGAGGAAGATGCTAACTTCAAAAGATACCAATTTCATTGGATTTACTTTTAAGAAGTCAAACGTTAAATCACTTGAGAGTACAGGTACGGATATGCATTCGAATACATCATCGAAAACACCATCTCTGGTTTCCTTGTTGGGTCGAATAGACTTGCAAGAAACTGTGATACCAGAAGTTGAACAAAAGCAGGAAGCATAA 1575 41.97 MDGGGDGTVRLGALNLKPDRSGFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRTLQRRVQEAQMSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLTAQQAKSEGQGHTDSNGSHWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPKISEEAKDLISHLLCDVEMRLGTRGIEEIKAHPWFKGIQWDKLYEMEAAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLESTGTDMHSNTSSKTPSLVSLLGRIDLQETVIPEVEQKQEA 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2595096 2600059 + Lag0004286.1 Lac6g0317 610086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0317 524 Coils Coil 58 102 - -
Lac6g0317 524 SUPERFAMILY Protein kinase-like (PK-like) 86 464 IPR011009 -
Lac6g0317 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 479 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lac6g0317 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g0317 524 SMART serkin_6 109 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0317 524 CDD MobB_NDR_LATS-like 43 104 - -
Lac6g0317 524 FunFam Non-specific serine/threonine protein kinase 80 192 - -
Lac6g0317 524 Gene3D Phosphorylase Kinase; domain 1 75 192 - -
Lac6g0317 524 Pfam Protein kinase domain 109 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0317 524 CDD STKc_NDR_like 107 476 - -
Lac6g0317 524 Gene3D Transferase(Phosphotransferase) domain 1 193 260 - -
Lac6g0317 524 FunFam Non-specific serine/threonine protein kinase 193 260 - -
Lac6g0317 524 FunFam Non-specific serine/threonine protein kinase 311 430 - -
Lac6g0317 524 Gene3D Transferase(Phosphotransferase) domain 1 311 430 - -
Lac6g0317 524 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Lac6g0317 524 ProSiteProfiles AGC-kinase C-terminal domain profile. 413 485 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0317 524 SMART pkinase_C_6 413 477 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0317 524 ProSiteProfiles Protein kinase domain profile. 109 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0317 524 Pfam Protein kinase C terminal domain 431 475 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0317 524 Gene3D Phosphorylase Kinase; domain 1 431 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2758 Lac-Chr2:42962246 Lac6g0317 Lac-Chr6:2595096 1.20E-39 dispersed
Lac3g0658 Lac-Chr3:5116600 Lac6g0317 Lac-Chr6:2595096 1.40E-55 dispersed
Lac4g1857 Lac-Chr4:37880167 Lac6g0317 Lac-Chr6:2595096 7.40E-172 dispersed
Lac6g0317 Lac-Chr6:2595096 Lac9g2534 Lac-Chr9:43988050 1.80E-48 dispersed
Lac6g0317 Lac-Chr6:2595096 Lac2g0475 Lac-Chr2:3485174 2.90E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86250 PF00069 Pkinase 9.20E-65 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0317 K08790 - csv:101222805 1018.07