Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0318 | ATGATGCCTCAAAATTTTCTACTCATTTCCATTTTTCCTCTTGCCCTCCTCCTTCTACCTCTAATTTTCTTTCATGTCCAAAAGATCAACAAGAATATTGCAAAGAAGCTCCCTCCTGGCTCAATGGGCTGGCCCCTAATCGGCGAGACCTTTCGTCTCTACTCTCAACATCCATCCTCCTTCTTCCTTGGAAAACAAAAAAGGTATGGGGATATATTCAAGACCCACATTCTTGGGTGTCCGTGTGTGATGTTGGCGACTCCCGAGGCGGCTCGGTTCGTGCTAGTGACGCAGGCTCATCTCTTCAAGCCCACATACCCACAAAGCAAAGAGCGTCTAATCGGACCATCGGCTCTGTTTTTCCACCAAAGCGAAACCCATTTGCGGCTGCGTAAGCTAATCCAAAGCTCCCTCTCACCGGACCCTGTCCGAGCCCTGGTCCCTGACATCCACGCCCTCGCCCTCTCTACATTGCCCGCATGGCTCAATGGCCATCTCATCAACACTTTCCATCAAATGAAGAAGTTCTCTTTTGAAGTCGGAATTTTGGCGATTTTTGGGCATTTGAAGGACGCCAATTACAGAGACGAATTACTGAGAAACTATTCCATAGTGAACAAAGGCTACAATTCTTTTCCAACCAACATTCCCGGAACGCTTTACAAAAAAGCACTTAAAGCGAGAAAGAGGCTGGGAGAGATCATAAGCTGTATAATCTCAGAGAAAAAGGAGAAGAGAAAGGAATTGGTGGAGAAGAATTTGTTGGGTTGTTTGCTAAAATGGAGAGATGAAAATGGAGAAAGTTTAAGTGATGAACAGATTGCTGATAATATAATTGGAGTTCTGTTTGCTGCTCAGGACACCACTGCCAGTGTTCTGACATGGGTTCTCAAATATCTCCATGATAATCAGAAAGTTCTAGAAGCTGTCAAGGCAGAACAAAAGGCAATTGAAGAGTGTATTGATGAGGGGAGCCGACCAATGAGTTGGACTCAGACACGAAACATGTCGTTTACCAACAAGGTGGTGTTGGAGAGCTTGAGAATGGCGAGTATTATATCATTCACTTTTAGAGAAGCTGTGACAGATGTTGAATATAATGGATATTTAATTCCAAAGGGTTGGAAAGTAATGCCTTTGTTCAGGAATATTCATCACAATCCTGACTACTTTGTTGACCCTCACAAATTTGATCCTTCAAGATTTGAGGTTGCTCCAAGACCCAATACATTCATGCCATTTGGCGGTGGGGTCCATGCCTGCCCTGGAAATGAGCTTGCCAAGCTTGAAATCTTGATCATGATTCACCATCTAGTCACCAAATTCAGGTGGGAATTGGCAGGAGAGAGAGATGGGATTCAGCATGGGCCATTTCCAGTGCCTATGGATGGGCTTCCAATCAGAGTGTGGAGATTATCCACATGA | 1425 | 44.63 | MMPQNFLLISIFPLALLLLPLIFFHVQKINKNIAKKLPPGSMGWPLIGETFRLYSQHPSSFFLGKQKRYGDIFKTHILGCPCVMLATPEAARFVLVTQAHLFKPTYPQSKERLIGPSALFFHQSETHLRLRKLIQSSLSPDPVRALVPDIHALALSTLPAWLNGHLINTFHQMKKFSFEVGILAIFGHLKDANYRDELLRNYSIVNKGYNSFPTNIPGTLYKKALKARKRLGEIISCIISEKKEKRKELVEKNLLGCLLKWRDENGESLSDEQIADNIIGVLFAAQDTTASVLTWVLKYLHDNQKVLEAVKAEQKAIEECIDEGSRPMSWTQTRNMSFTNKVVLESLRMASIISFTFREAVTDVEYNGYLIPKGWKVMPLFRNIHHNPDYFVDPHKFDPSRFEVAPRPNTFMPFGGGVHACPGNELAKLEILIMIHHLVTKFRWELAGERDGIQHGPFPVPMDGLPIRVWRLST | 474 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2614235 | 2618031 | + | Lag0004287.1 | Lac6g0318 | 610087 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0318 | 474 | PRINTS | E-class P450 group I signature | 380 | 404 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | E-class P450 group I signature | 273 | 290 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | E-class P450 group I signature | 293 | 319 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | E-class P450 group I signature | 411 | 421 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | E-class P450 group I signature | 421 | 444 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | E-class P450 group I signature | 66 | 85 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | E-class P450 group I signature | 340 | 358 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | P450 superfamily signature | 421 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | P450 superfamily signature | 341 | 352 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | P450 superfamily signature | 284 | 301 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PRINTS | P450 superfamily signature | 412 | 421 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | Gene3D | Cytochrome P450 | 26 | 472 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | PANTHER | CYTOCHROME P450 26 | 36 | 448 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Lac6g0318 | 474 | CDD | CYP90-like | 66 | 469 | - | - | |
| Lac6g0318 | 474 | Pfam | Cytochrome P450 | 38 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0318 | 474 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 414 | 423 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac6g0318 | 474 | FunFam | Abscisic acid 8 | 27 | 471 | - | - | |
| Lac6g0318 | 474 | SUPERFAMILY | Cytochrome P450 | 35 | 470 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0400 | Lac-Chr3:3007701 | Lac6g0318 | Lac-Chr6:2614235 | 6.70E-50 | dispersed | |
| Lac6g0318 | Lac-Chr6:2614235 | Lac7g0373 | Lac-Chr7:2868507 | 5.40E-73 | dispersed | |
| Lac7g2750 | Lac-Chr7:46655566 | Lac6g0318 | Lac-Chr6:2614235 | 1.90E-148 | transposed | |
| Lac2g0312 | Lac-Chr2:2326752 | Lac6g0318 | Lac-Chr6:2614235 | 6.40E-191 | wgd | |
| Lac4g1633 | Lac-Chr4:35006530 | Lac6g0318 | Lac-Chr6:2614235 | 2.90E-174 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g0318 | K09843 | - | vvi:100245540 | 672.93 |