Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0319 ATGGCGGTTTCACTTTCAGCAGCCACTGCCACTGCCACTGCCAGAGCCTTCCTTCCGCAGCCCTCTTCTTCATCTTCCTCCTCCATTTCCGCGCCCTTTTACACTCCCTCATTCAACCCTAAACCCTCCCGCCGCTCAATAACAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCCCTGCATCTCGACGGAAGCCTCGCCGGCGATTTTGGATTCGACCCACTTGGCCTCGCCGAAGACCCAGATAGTTTGAAGTGGTACGTTCAAGCAGAGCTCGTTCATTCTCGCTTCGCCATGCTCGGCGTCTCTGGAATTCTTCTCACAGATTTGCTTCGAGTGACAGGAATCAGTAACTTGCCAGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTTGATGGGCTTTGTGGAAACCAAAAGATATATGGATTTCAAGAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAATCCGCTCTCAGGGGTCTCGAACCCGGATATCCTGGGGGTCCTCTGCTGAATCCTCTTGGCCTGGCTAAAGATATCAAGATTGCACATGACTGGAAGCTCAAGGAGATTAAGAATGGACGGCTGGCGATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTCTCGAGCTCAAGTCCTTGA 798 51.25 MAVSLSAATATATARAFLPQPSSSSSSSISAPFYTPSFNPKPSRRSITAQAQSQPRQTWLPGLDPPLHLDGSLAGDFGFDPLGLAEDPDSLKWYVQAELVHSRFAMLGVSGILLTDLLRVTGISNLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESALRGLEPGYPGGPLLNPLGLAKDIKIAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2619212 2620569 + Lag0004288.1 Lac6g0319 610088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0319 265 FunFam Chlorophyll a-b binding protein, chloroplastic 57 264 - -
Lac6g0319 265 SUPERFAMILY Chlorophyll a-b binding protein 53 262 - -
Lac6g0319 265 Gene3D Chlorophyll a/b binding protein domain 56 264 - -
Lac6g0319 265 MobiDBLite consensus disorder prediction 18 60 - -
Lac6g0319 265 Pfam Chlorophyll A-B binding protein 66 233 IPR022796 -
Lac6g0319 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 256 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Lac6g0319 265 MobiDBLite consensus disorder prediction 18 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0610 Lac-Chr3:4737376 Lac6g0319 Lac-Chr6:2619212 1.40E-56 dispersed
Lac3g1509 Lac-Chr3:13926876 Lac6g0319 Lac-Chr6:2619212 1.80E-44 dispersed
Lac5g1661 Lac-Chr5:33724674 Lac6g0319 Lac-Chr6:2619212 1.60E-26 dispersed
Lac6g0319 Lac-Chr6:2619212 Lac8g1690 Lac-Chr8:34998592 3.10E-33 dispersed
Lac6g0319 Lac-Chr6:2619212 Lac10g0087 Lac-Chr10:677428 4.00E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0319 K08911 - csv:101219846 399.438