Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0336 | ATGGGGATCGCTAATCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAACTGTCCAGGCCTCGCGTGACGCAGAAACAACTGGTGGTGGTGAGGCGGTCCAGTCGCGTAGCGAAACAATCAGCCCCTGTTTACGCCGAAGTTGTTGTCAATCGCGTGGTGATTCCTAGAAGGATCTCCAAAGCAAGAGATTTTTCAAACCGGGTTTATGCTTCGGATGAAGCAAGAAAAAATGCCCTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAATCTCATGTTAGTGGTGGATTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAATCGTGATGGAGTAATGACTTTAATAGATGAAGATGGCGACGAATATCCAACAGTATATTTAGCACGAAAAACAGGACTTAGTGGTGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCTGTGATTTTTCAATTCACTAAACCTACAATCTGCAAGGTGATTCCCCTTCATCTCTTTACTGGATTCACAATCCTTGAACTTTGTCTTGCTTGGTCTGTTTAG | 699 | 44.92 | MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLSRPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRISKARDFSNRVYASDEARKNALERAEQLQSGLEPNYPNFIKSMLQSHVSGGFWLGLPSHFCKTHLPNRDGVMTLIDEDGDEYPTVYLARKTGLSGGWKGFSVAHKLADGDAVIFQFTKPTICKVIPLHLFTGFTILELCLAWSV | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2819040 | 2820224 | - | Lag0004305.1 | Lac6g0336 | 610105 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0336 | 232 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 221 | IPR003340 | GO:0003677(InterPro) | |
| Lac6g0336 | 232 | Pfam | B3 DNA binding domain | 127 | 206 | IPR003340 | GO:0003677(InterPro) | |
| Lac6g0336 | 232 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 12 | 212 | IPR044837 | - | |
| Lac6g0336 | 232 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 213 | IPR015300 | - | |
| Lac6g0336 | 232 | CDD | B3_DNA | 125 | 208 | IPR003340 | GO:0003677(InterPro) | |
| Lac6g0336 | 232 | Coils | Coil | 6 | 26 | - | - | |
| Lac6g0336 | 232 | SMART | B3_2 | 127 | 213 | IPR003340 | GO:0003677(InterPro) | |
| Lac6g0336 | 232 | Gene3D | - | 101 | 218 | IPR015300 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g2540 | Lac-Chr5:43938573 | Lac6g0336 | Lac-Chr6:2819040 | 1.20E-32 | dispersed | |
| Lac6g0336 | Lac-Chr6:2819040 | Lac9g0883 | Lac-Chr9:19287619 | 4.20E-26 | dispersed | |
| Lac6g0336 | Lac-Chr6:2819040 | Lac6g0337 | Lac-Chr6:2825650 | 1.50E-97 | tandem | |
| Lac4g1624 | Lac-Chr4:34943462 | Lac6g0336 | Lac-Chr6:2819040 | 5.70E-61 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23981 | PF02362 | B3 | 1.40E-12 | CL0405 | Lac | TF |
Pathway information