Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0337 | ATGGGAGTCGCTAATCTTTCGTACGAGGAATGTCGTCGCAAGAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATCTGCCCCTGCTTTCTCAAGCTCTTCTCGATTCTTCCCCTTCCAAATCCCCCCCTAGTAAGCAGGCAAAGCCTCGCGTGACGCACAAAGAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAACAACCAGCCCCTGTTTACGCTGAAGTTCTTGTCGATCGTGTGGCGAATCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTTTATGCTTCGGACGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCTAACTGTATAAAGTCAATGGTTCGATCTCATGTTAGTGGTTGTTTCTGGCTGGGTCTTCCTGCTCATTTCTGCAAGACGTACCTTCCAAATAATGATGGAGCAATGACTTTAATAGATCAAGATGGCGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGGTTTTTCGATTTCTCATAAATTGACAGATGGGGATGCTGTGGTTTTTCAACTCATTAAACCTACAACCTGCAAGGTATACATTTTTAGGGCGGATGGTTCCAAAGAAGATAGTGCTTCTAGCAGTAGCTAA | 690 | 44.64 | MGVANLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSPPSKQAKPRVTHKELVVVRRSSRVAKQPAPVYAEVLVDRVANPRRISRARDFSDQFYASDEARKNAFERAEQLQSGLEPNYPNCIKSMVRSHVSGCFWLGLPAHFCKTYLPNNDGAMTLIDQDGDEYPIIYLARKTGFSGGWKGFSISHKLTDGDAVVFQLIKPTTCKVYIFRADGSKEDSASSSS | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2825650 | 2827392 | - | Lag0004306.1 | Lac6g0337 | 610106 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0337 | 229 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 218 | IPR003340 | GO:0003677(InterPro) | |
Lac6g0337 | 229 | Pfam | B3 DNA binding domain | 128 | 217 | IPR003340 | GO:0003677(InterPro) | |
Lac6g0337 | 229 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 12 | 219 | IPR044837 | - | |
Lac6g0337 | 229 | CDD | B3_DNA | 125 | 216 | IPR003340 | GO:0003677(InterPro) | |
Lac6g0337 | 229 | Gene3D | - | 101 | 219 | IPR015300 | - | |
Lac6g0337 | 229 | SMART | B3_2 | 127 | 218 | IPR003340 | GO:0003677(InterPro) | |
Lac6g0337 | 229 | MobiDBLite | consensus disorder prediction | 34 | 48 | - | - | |
Lac6g0337 | 229 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 219 | IPR015300 | - | |
Lac6g0337 | 229 | MobiDBLite | consensus disorder prediction | 34 | 54 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g1624 | Lac-Chr4:34943462 | Lac6g0337 | Lac-Chr6:2825650 | 1.80E-59 | dispersed | |
Lac6g0336 | Lac-Chr6:2819040 | Lac6g0337 | Lac-Chr6:2825650 | 1.50E-97 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23982 | PF02362 | B3 | 1.50E-12 | CL0405 | Lac | TF |
Pathway information
