Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0337 ATGGGAGTCGCTAATCTTTCGTACGAGGAATGTCGTCGCAAGAGAGTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATCTGCCCCTGCTTTCTCAAGCTCTTCTCGATTCTTCCCCTTCCAAATCCCCCCCTAGTAAGCAGGCAAAGCCTCGCGTGACGCACAAAGAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCAAAACAACCAGCCCCTGTTTACGCTGAAGTTCTTGTCGATCGTGTGGCGAATCCTAGAAGGATCTCCAGAGCAAGAGATTTTTCAGACCAGTTTTATGCTTCGGACGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGAGCCGAATTATCCTAACTGTATAAAGTCAATGGTTCGATCTCATGTTAGTGGTTGTTTCTGGCTGGGTCTTCCTGCTCATTTCTGCAAGACGTACCTTCCAAATAATGATGGAGCAATGACTTTAATAGATCAAGATGGCGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGGTTTTTCGATTTCTCATAAATTGACAGATGGGGATGCTGTGGTTTTTCAACTCATTAAACCTACAACCTGCAAGGTATACATTTTTAGGGCGGATGGTTCCAAAGAAGATAGTGCTTCTAGCAGTAGCTAA 690 44.64 MGVANLSYEECRRKRVEENKKRMEALNLPLLSQALLDSSPSKSPPSKQAKPRVTHKELVVVRRSSRVAKQPAPVYAEVLVDRVANPRRISRARDFSDQFYASDEARKNAFERAEQLQSGLEPNYPNCIKSMVRSHVSGCFWLGLPAHFCKTYLPNNDGAMTLIDQDGDEYPIIYLARKTGFSGGWKGFSISHKLTDGDAVVFQLIKPTTCKVYIFRADGSKEDSASSSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2825650 2827392 - Lag0004306.1 Lac6g0337 610106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0337 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Lac6g0337 229 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677(InterPro)
Lac6g0337 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
Lac6g0337 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Lac6g0337 229 Gene3D - 101 219 IPR015300 -
Lac6g0337 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Lac6g0337 229 MobiDBLite consensus disorder prediction 34 48 - -
Lac6g0337 229 SUPERFAMILY DNA-binding pseudobarrel domain 121 219 IPR015300 -
Lac6g0337 229 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1624 Lac-Chr4:34943462 Lac6g0337 Lac-Chr6:2825650 1.80E-59 dispersed
Lac6g0336 Lac-Chr6:2819040 Lac6g0337 Lac-Chr6:2825650 1.50E-97 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23982 PF02362 B3 1.50E-12 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0337 - - - 0.0