Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0356 ATGCCTTTCTTTTACAAAAGCGCTTCGAATTCTCGGATTCAACAGAAGGTTCCTGATTCTGAATTTTCCGTTGGTCTACCGGAACCGCTCGTTCAACGGCGGCTCACCCGACAGAGGAAGCTCCGGCATCTTACCGATCAAGACGTTGGCCTTCAACACCGCCGATCTTTTCCCGATTCCCCCGATTTATCGGCTAAACCTAGATCGCCTCTTGGGGGTTCCGAACGTTGGTCATCGGAGGCTTTGCCCCAGCCTCTGCCTCTGCCGGAGTACTTTCCGCTTCGAAATCCGGAGTCGGGTTCTTGGAGTTCCGGCCAAGGCCGCGTTGGATCGCCGATTGAAGCTCCGGTCCGGAAGAGCTCTGATCATTCAACAACGAATGCAAATAGAAGTTTGGGCAACAATCAAAGGCGTGTTGCTATAGATTTTGCCTTGGAAGTTGCTAATGGCAATACAGGAGGGAATGGGGCTACCACATTTACAATCCCTCAAAGTCTCTCTGTGAACTCAGGGAAATCAAATTCGAATAAGGAGTTTGTTTTTGTTTGTTTGGATCAGCCTCCAAACAACAAAGGCAGGGGATCTCCTACTCATCCGAGTGTTGAAAGGGGCAACTTCAATTTGACACCGAAGACTTCGTCGTCGAAGAGTGCGCCAACGAGCATTTTACCGAGTCCCGCCGTTAGCCCACGAAGATCATATACTGGAGATCTTTTTGTTTCTGGTTTGACTCGCCATGAACATCAGGAATCTCCTTCTAATAATTCTCCCAAAGTACCAACCCTTAAAACTGCACATAGTTCTCAGCCTTCTCCTCTCCATAGCCCAACAACTCGAAGTTCCGCAAGCAATTCCAGATCTCCTAATGATATGCCATTTCCTCTGCATCATAAGTTACAAAAGGATAGCAGTATAGATCGGTCCGAAAACCATGGACATGTCAATGCCCATCCATTGCCCCTTCCTCCTCCATTAATAGCCTGTTCACAATCATCTCCACAATCTCATTCGTCGAATGTTCATCATGTTATTGAGAAACCATTCATTTCATCTATGAAATGTCAGTGGCAGAAAGGAAAGCTTATTGGGCGTGGTACGTTCGGAAGCGTTTATCTTGCAACCAACAGAGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAGAGTGCTGAAAGTATAAAGCAACTAGAGCAGGAAATTAAAGTTCTCAGTCAGCTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGATGATCATTTCTATATATATTTGGAGTACGTTTTTCCGGGTTCAATCAATAAATATGTCCGTGAACATTGTGGAGCTATTACAGAATCCATCGTTCGGAATTTCACTCGCCATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAAACAATCCACAGGGATATCAAAGGTGCAAACTTGCTAGTTGACTCGTCAGGCGTTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCGGAGGTCATAAAGGCTGCTATGTTGAAAGATATCAACCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATCATTGAAATGCTGAATGGAAAACCTCCATGGAGTGAGTATGAAGGGCATCAAGCTATGTTCAAAGTGTTGAACAAAACCCCACCTATCCCAGAAAAGCTATCTCCAGAAGGGAAAGACTTCCTCCAGTGTTGCTTCCAAAGGAATCCAGCTGACAGACCAACAGCCATGGTGCTGCTTGACCATCCTTTCTTAAGATTCTCAAATGACTCAAATGTTTCAATCCCCACATCAGCATTTTCAACAATGAACCTCTTGGAAAAATTGTTGAGTCCCAAGGACCACCTTCATCCCAAAGGAGACCAAGGGCAAAACTCTCCCGGAACTTCGGCTGCAAATGATTACCTGCCGTGCCGTAGCCCTTCAACGAACATTCCAAGCAATATTCCTGCCAGTGCCGTTAACAACCATCACTTTGCTCTTTCAAGGACCCATACAAGGGAAGTGCCGCACCTCTGA 2112 45.45 MPFFYKSASNSRIQQKVPDSEFSVGLPEPLVQRRLTRQRKLRHLTDQDVGLQHRRSFPDSPDLSAKPRSPLGGSERWSSEALPQPLPLPEYFPLRNPESGSWSSGQGRVGSPIEAPVRKSSDHSTTNANRSLGNNQRRVAIDFALEVANGNTGGNGATTFTIPQSLSVNSGKSNSNKEFVFVCLDQPPNNKGRGSPTHPSVERGNFNLTPKTSSSKSAPTSILPSPAVSPRRSYTGDLFVSGLTRHEHQESPSNNSPKVPTLKTAHSSQPSPLHSPTTRSSASNSRSPNDMPFPLHHKLQKDSSIDRSENHGHVNAHPLPLPPPLIACSQSSPQSHSSNVHHVIEKPFISSMKCQWQKGKLIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIDDHFYIYLEYVFPGSINKYVREHCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAAMLKDINPDLALAVDIWSLGCTIIEMLNGKPPWSEYEGHQAMFKVLNKTPPIPEKLSPEGKDFLQCCFQRNPADRPTAMVLLDHPFLRFSNDSNVSIPTSAFSTMNLLEKLLSPKDHLHPKGDQGQNSPGTSAANDYLPCRSPSTNIPSNIPASAVNNHHFALSRTHTREVPHL 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2949106 2952984 - Lag0004325.1 Lac6g0356 610125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0356 703 Gene3D Transferase(Phosphotransferase) domain 1 353 645 - -
Lac6g0356 703 MobiDBLite consensus disorder prediction 644 681 - -
Lac6g0356 703 MobiDBLite consensus disorder prediction 37 134 - -
Lac6g0356 703 Pfam Protein kinase domain 357 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0356 703 MobiDBLite consensus disorder prediction 653 681 - -
Lac6g0356 703 MobiDBLite consensus disorder prediction 118 134 - -
Lac6g0356 703 ProSiteProfiles Protein kinase domain profile. 356 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0356 703 MobiDBLite consensus disorder prediction 41 61 - -
Lac6g0356 703 MobiDBLite consensus disorder prediction 246 290 - -
Lac6g0356 703 MobiDBLite consensus disorder prediction 295 313 - -
Lac6g0356 703 MobiDBLite consensus disorder prediction 184 337 - -
Lac6g0356 703 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 33 620 IPR050538 -
Lac6g0356 703 SUPERFAMILY Protein kinase-like (PK-like) 354 628 IPR011009 -
Lac6g0356 703 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524(InterPro)
Lac6g0356 703 MobiDBLite consensus disorder prediction 190 228 - -
Lac6g0356 703 SMART serkin_6 356 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0356 703 FunFam Mitogen-activated protein kinase kinase kinase 5 353 653 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2543 Lac-Chr1:46808189 Lac6g0356 Lac-Chr6:2949106 2.20E-138 dispersed
Lac5g2947 Lac-Chr5:47502179 Lac6g0356 Lac-Chr6:2949106 3.10E-93 dispersed
Lac6g0356 Lac-Chr6:2949106 Lac8g1900 Lac-Chr8:37256127 5.20E-64 dispersed
Lac6g0356 Lac-Chr6:2949106 Lac11g0043 Lac-Chr11:370305 5.70E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86251 PF00069 Pkinase 6.00E-69 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0356 - - - 0.0