Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0356 | ATGCCTTTCTTTTACAAAAGCGCTTCGAATTCTCGGATTCAACAGAAGGTTCCTGATTCTGAATTTTCCGTTGGTCTACCGGAACCGCTCGTTCAACGGCGGCTCACCCGACAGAGGAAGCTCCGGCATCTTACCGATCAAGACGTTGGCCTTCAACACCGCCGATCTTTTCCCGATTCCCCCGATTTATCGGCTAAACCTAGATCGCCTCTTGGGGGTTCCGAACGTTGGTCATCGGAGGCTTTGCCCCAGCCTCTGCCTCTGCCGGAGTACTTTCCGCTTCGAAATCCGGAGTCGGGTTCTTGGAGTTCCGGCCAAGGCCGCGTTGGATCGCCGATTGAAGCTCCGGTCCGGAAGAGCTCTGATCATTCAACAACGAATGCAAATAGAAGTTTGGGCAACAATCAAAGGCGTGTTGCTATAGATTTTGCCTTGGAAGTTGCTAATGGCAATACAGGAGGGAATGGGGCTACCACATTTACAATCCCTCAAAGTCTCTCTGTGAACTCAGGGAAATCAAATTCGAATAAGGAGTTTGTTTTTGTTTGTTTGGATCAGCCTCCAAACAACAAAGGCAGGGGATCTCCTACTCATCCGAGTGTTGAAAGGGGCAACTTCAATTTGACACCGAAGACTTCGTCGTCGAAGAGTGCGCCAACGAGCATTTTACCGAGTCCCGCCGTTAGCCCACGAAGATCATATACTGGAGATCTTTTTGTTTCTGGTTTGACTCGCCATGAACATCAGGAATCTCCTTCTAATAATTCTCCCAAAGTACCAACCCTTAAAACTGCACATAGTTCTCAGCCTTCTCCTCTCCATAGCCCAACAACTCGAAGTTCCGCAAGCAATTCCAGATCTCCTAATGATATGCCATTTCCTCTGCATCATAAGTTACAAAAGGATAGCAGTATAGATCGGTCCGAAAACCATGGACATGTCAATGCCCATCCATTGCCCCTTCCTCCTCCATTAATAGCCTGTTCACAATCATCTCCACAATCTCATTCGTCGAATGTTCATCATGTTATTGAGAAACCATTCATTTCATCTATGAAATGTCAGTGGCAGAAAGGAAAGCTTATTGGGCGTGGTACGTTCGGAAGCGTTTATCTTGCAACCAACAGAGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAGAGTGCTGAAAGTATAAAGCAACTAGAGCAGGAAATTAAAGTTCTCAGTCAGCTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGATGATCATTTCTATATATATTTGGAGTACGTTTTTCCGGGTTCAATCAATAAATATGTCCGTGAACATTGTGGAGCTATTACAGAATCCATCGTTCGGAATTTCACTCGCCATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAAACAATCCACAGGGATATCAAAGGTGCAAACTTGCTAGTTGACTCGTCAGGCGTTGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCGGAGGTCATAAAGGCTGCTATGTTGAAAGATATCAACCCTGATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATCATTGAAATGCTGAATGGAAAACCTCCATGGAGTGAGTATGAAGGGCATCAAGCTATGTTCAAAGTGTTGAACAAAACCCCACCTATCCCAGAAAAGCTATCTCCAGAAGGGAAAGACTTCCTCCAGTGTTGCTTCCAAAGGAATCCAGCTGACAGACCAACAGCCATGGTGCTGCTTGACCATCCTTTCTTAAGATTCTCAAATGACTCAAATGTTTCAATCCCCACATCAGCATTTTCAACAATGAACCTCTTGGAAAAATTGTTGAGTCCCAAGGACCACCTTCATCCCAAAGGAGACCAAGGGCAAAACTCTCCCGGAACTTCGGCTGCAAATGATTACCTGCCGTGCCGTAGCCCTTCAACGAACATTCCAAGCAATATTCCTGCCAGTGCCGTTAACAACCATCACTTTGCTCTTTCAAGGACCCATACAAGGGAAGTGCCGCACCTCTGA | 2112 | 45.45 | MPFFYKSASNSRIQQKVPDSEFSVGLPEPLVQRRLTRQRKLRHLTDQDVGLQHRRSFPDSPDLSAKPRSPLGGSERWSSEALPQPLPLPEYFPLRNPESGSWSSGQGRVGSPIEAPVRKSSDHSTTNANRSLGNNQRRVAIDFALEVANGNTGGNGATTFTIPQSLSVNSGKSNSNKEFVFVCLDQPPNNKGRGSPTHPSVERGNFNLTPKTSSSKSAPTSILPSPAVSPRRSYTGDLFVSGLTRHEHQESPSNNSPKVPTLKTAHSSQPSPLHSPTTRSSASNSRSPNDMPFPLHHKLQKDSSIDRSENHGHVNAHPLPLPPPLIACSQSSPQSHSSNVHHVIEKPFISSMKCQWQKGKLIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIDDHFYIYLEYVFPGSINKYVREHCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAAMLKDINPDLALAVDIWSLGCTIIEMLNGKPPWSEYEGHQAMFKVLNKTPPIPEKLSPEGKDFLQCCFQRNPADRPTAMVLLDHPFLRFSNDSNVSIPTSAFSTMNLLEKLLSPKDHLHPKGDQGQNSPGTSAANDYLPCRSPSTNIPSNIPASAVNNHHFALSRTHTREVPHL | 703 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2949106 | 2952984 | - | Lag0004325.1 | Lac6g0356 | 610125 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0356 | 703 | Gene3D | Transferase(Phosphotransferase) domain 1 | 353 | 645 | - | - | |
Lac6g0356 | 703 | MobiDBLite | consensus disorder prediction | 644 | 681 | - | - | |
Lac6g0356 | 703 | MobiDBLite | consensus disorder prediction | 37 | 134 | - | - | |
Lac6g0356 | 703 | Pfam | Protein kinase domain | 357 | 616 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g0356 | 703 | MobiDBLite | consensus disorder prediction | 653 | 681 | - | - | |
Lac6g0356 | 703 | MobiDBLite | consensus disorder prediction | 118 | 134 | - | - | |
Lac6g0356 | 703 | ProSiteProfiles | Protein kinase domain profile. | 356 | 616 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g0356 | 703 | MobiDBLite | consensus disorder prediction | 41 | 61 | - | - | |
Lac6g0356 | 703 | MobiDBLite | consensus disorder prediction | 246 | 290 | - | - | |
Lac6g0356 | 703 | MobiDBLite | consensus disorder prediction | 295 | 313 | - | - | |
Lac6g0356 | 703 | MobiDBLite | consensus disorder prediction | 184 | 337 | - | - | |
Lac6g0356 | 703 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 33 | 620 | IPR050538 | - | |
Lac6g0356 | 703 | SUPERFAMILY | Protein kinase-like (PK-like) | 354 | 628 | IPR011009 | - | |
Lac6g0356 | 703 | ProSitePatterns | Protein kinases ATP-binding region signature. | 362 | 385 | IPR017441 | GO:0005524(InterPro) | |
Lac6g0356 | 703 | MobiDBLite | consensus disorder prediction | 190 | 228 | - | - | |
Lac6g0356 | 703 | SMART | serkin_6 | 356 | 616 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g0356 | 703 | FunFam | Mitogen-activated protein kinase kinase kinase 5 | 353 | 653 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2543 | Lac-Chr1:46808189 | Lac6g0356 | Lac-Chr6:2949106 | 2.20E-138 | dispersed | |
Lac5g2947 | Lac-Chr5:47502179 | Lac6g0356 | Lac-Chr6:2949106 | 3.10E-93 | dispersed | |
Lac6g0356 | Lac-Chr6:2949106 | Lac8g1900 | Lac-Chr8:37256127 | 5.20E-64 | dispersed | |
Lac6g0356 | Lac-Chr6:2949106 | Lac11g0043 | Lac-Chr11:370305 | 5.70E-95 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86251 | PF00069 | Pkinase | 6.00E-69 | CL0016 | Lac | PK |
Pathway information
