Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0365 ATGTTTAGCTCCACCCACATGATCATGGAGCCGACGCCACCGCCATTGCCGGACCTCTCCTTGCAGATTAGTCCGCCGTCGGATTCCGGCAGCGGCAGCGATCTGAGCCATGAGAATGCTGCTGCTGCTGCTGCTGCTGCTGGGTTTTTTCTTCCGGCTAAACCCCACGTGGGATTAGGCGTGGAGCTTGAGAGAAGCTTCAATGGCCGCCATTTTAACGACCACCAACCTCAAATCTATGGCCGCCATTTCAAGAGAGGAGCAAAAATTGGGTTTGGAGTTAAAAGAAGCATTAGAGCTCCGAGAATGAGATGGACTACGACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTATTGGAGCTGATGAATGTCAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGACTCAGCCTTGAAGAACCAGAGGCAAGAAATTGATGCAAGTGGTGTTTCAAATTGTGAGATCTCTAACCCAAAACTTACAGTGTGGAAAAGCCCTGATCAAATGAAGTTGTTCTCTTCATCAATGGAGACAAATGAAGAACTGACGAGCAGATGGAGTCAACATCGCAACAAAAGTATTGGAAACAACCAGGAGCAGGAGGACCGACACAATGCAAGCATCAAAATCTCGAGTGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATGGCGATGTGTATAATAATAGTAATAATAATCTTAATTTAGATTTCACTCTCGGATGTCCAAATTCTCTAACAATTGATTCTAATTCTGAACTTCCTCTTCTTAAATGCTAA 882 45.46 MFSSTHMIMEPTPPPLPDLSLQISPPSDSGSGSDLSHENAAAAAAAAGFFLPAKPHVGLGVELERSFNGRHFNDHQPQIYGRHFKRGAKIGFGVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDSALKNQRQEIDASGVSNCEISNPKLTVWKSPDQMKLFSSSMETNEELTSRWSQHRNKSIGNNQEQEDRHNASIKISSGVKKQRLEGSCLSLCDHGDVYNNSNNNLNLDFTLGCPNSLTIDSNSELPLLKC 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3024334 3026856 + Lag0004334.1 Lac6g0365 610134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0365 293 MobiDBLite consensus disorder prediction 1 38 - -
Lac6g0365 293 FunFam Myb family transcription factor 99 157 - -
Lac6g0365 293 Pfam Myb-like DNA-binding domain 102 153 IPR001005 -
Lac6g0365 293 SUPERFAMILY Homeodomain-like 98 155 IPR009057 -
Lac6g0365 293 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 9 278 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Lac6g0365 293 MobiDBLite consensus disorder prediction 209 241 - -
Lac6g0365 293 MobiDBLite consensus disorder prediction 223 237 - -
Lac6g0365 293 Gene3D - 100 157 - -
Lac6g0365 293 MobiDBLite consensus disorder prediction 22 36 - -
Lac6g0365 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 154 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0365 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2446 Lac-Chr11:40653609 Lac6g0365 Lac-Chr6:3024334 1.80E-29 dispersed
Lac2g1030 Lac-Chr2:8168173 Lac6g0365 Lac-Chr6:3024334 1.10E-14 dispersed
Lac5g0191 Lac-Chr5:1631800 Lac6g0365 Lac-Chr6:3024334 2.70E-30 dispersed
Lac6g0365 Lac-Chr6:3024334 Lac8g1966 Lac-Chr8:38109935 6.90E-26 dispersed
Lac2g0265 Lac-Chr2:1996249 Lac6g0365 Lac-Chr6:3024334 1.20E-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac11g2446 . 190 391 G2-like Transcription Factor Family AT5G16560 50.7 4.7e-41 166.4
Lac11g2446 . 198 391 G2-like Transcription Factor Family AT4G17695 50.3 1.6e-36 151.0
Lac2g0265 . 10 183 G2-like Transcription Factor Family AT5G42630 58.2 2.6e-41 166.4
Lac6g0365 . 16 162 G2-like Transcription Factor Family AT5G42630 60.6 2.4e-39 159.8
Lac7g2753 . 1 322 G2-like Transcription Factor Family AT5G59570 50.7 1.9e-63 240.4
Lac9g2452 . 19 216 G2-like Transcription Factor Family AT5G59570 50.2 5.5e-39 159.1
Lac13g0461 . 19 260 G2-like Transcription Factor Family AT1G25550 50.6 4.0e-52 202.6
Lac8g1421 . 20 266 G2-like Transcription Factor Family AT1G25550 54.2 4.5e-51 199.1
Lac7g2753 . 1 295 G2-like Transcription Factor Family AT3G46640 50.7 6.0e-63 238.8
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT5G05090 56.9 2.8e-74 276.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT5G05090 57.4 1.5e-72 270.4
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT4G13640 56.7 1.2e-62 237.7
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac9g2297 . 1 364 G2-like Transcription Factor Family AT1G79430 53.5 9.1e-81 298.1
Lac12g0030 . 3 356 G2-like Transcription Factor Family AT1G79430 52.8 1.2e-80 297.7
Lac7g0460 . 44 208 G2-like Transcription Factor Family AT1G79430 61.2 1.7e-39 161.0
Lac1g3110 . 85 330 G2-like Transcription Factor Family AT2G01060 62.8 4.2e-58 222.2
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-91 333.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT3G10760 57.5 4.2e-88 322.4
Lac1g1554 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.6e-60 230.3
Lac3g1914 . 485 626 G2-like Transcription Factor Family AT4G28610 71.3 3.5e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23985 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Lac TF