Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0365 ATGTTTAGCTCCACCCACATGATCATGGAGCCGACGCCACCGCCATTGCCGGACCTCTCCTTGCAGATTAGTCCGCCGTCGGATTCCGGCAGCGGCAGCGATCTGAGCCATGAGAATGCTGCTGCTGCTGCTGCTGCTGCTGGGTTTTTTCTTCCGGCTAAACCCCACGTGGGATTAGGCGTGGAGCTTGAGAGAAGCTTCAATGGCCGCCATTTTAACGACCACCAACCTCAAATCTATGGCCGCCATTTCAAGAGAGGAGCAAAAATTGGGTTTGGAGTTAAAAGAAGCATTAGAGCTCCGAGAATGAGATGGACTACGACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTATTGGAGCTGATGAATGTCAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGACTCAGCCTTGAAGAACCAGAGGCAAGAAATTGATGCAAGTGGTGTTTCAAATTGTGAGATCTCTAACCCAAAACTTACAGTGTGGAAAAGCCCTGATCAAATGAAGTTGTTCTCTTCATCAATGGAGACAAATGAAGAACTGACGAGCAGATGGAGTCAACATCGCAACAAAAGTATTGGAAACAACCAGGAGCAGGAGGACCGACACAATGCAAGCATCAAAATCTCGAGTGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATGGCGATGTGTATAATAATAGTAATAATAATCTTAATTTAGATTTCACTCTCGGATGTCCAAATTCTCTAACAATTGATTCTAATTCTGAACTTCCTCTTCTTAAATGCTAA 882 45.46 MFSSTHMIMEPTPPPLPDLSLQISPPSDSGSGSDLSHENAAAAAAAAGFFLPAKPHVGLGVELERSFNGRHFNDHQPQIYGRHFKRGAKIGFGVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDSALKNQRQEIDASGVSNCEISNPKLTVWKSPDQMKLFSSSMETNEELTSRWSQHRNKSIGNNQEQEDRHNASIKISSGVKKQRLEGSCLSLCDHGDVYNNSNNNLNLDFTLGCPNSLTIDSNSELPLLKC 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3024334 3026856 + Lag0004334.1 Lac6g0365 610134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0365 293 MobiDBLite consensus disorder prediction 1 38 - -
Lac6g0365 293 FunFam Myb family transcription factor 99 157 - -
Lac6g0365 293 Pfam Myb-like DNA-binding domain 102 153 IPR001005 -
Lac6g0365 293 SUPERFAMILY Homeodomain-like 98 155 IPR009057 -
Lac6g0365 293 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 9 278 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Lac6g0365 293 MobiDBLite consensus disorder prediction 209 241 - -
Lac6g0365 293 MobiDBLite consensus disorder prediction 223 237 - -
Lac6g0365 293 Gene3D - 100 157 - -
Lac6g0365 293 MobiDBLite consensus disorder prediction 22 36 - -
Lac6g0365 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 154 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2446 Lac-Chr11:40653609 Lac6g0365 Lac-Chr6:3024334 1.80E-29 dispersed
Lac2g1030 Lac-Chr2:8168173 Lac6g0365 Lac-Chr6:3024334 1.10E-14 dispersed
Lac5g0191 Lac-Chr5:1631800 Lac6g0365 Lac-Chr6:3024334 2.70E-30 dispersed
Lac6g0365 Lac-Chr6:3024334 Lac8g1966 Lac-Chr8:38109935 6.90E-26 dispersed
Lac2g0265 Lac-Chr2:1996249 Lac6g0365 Lac-Chr6:3024334 1.20E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23985 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0365 - - - 0.0