Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0376 | ATGTCTAGCGGGTTTGGGGAATCGACGAGTAGGCAACCCCAAAGCCCTTCGTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGCGGTCATCTTTTTTGTTGGCCATGTCTTTATAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCTGTTTGTAAGGCTATCATAGAAGAGCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGAATGACCCGAGATCGAAAAGTATTCCGGGGATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCTGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCGTCGACGAGGTTTGGTAATTTTACATTGTCTGCAGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCTTATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGTTTTTGTTAATTGGTTTCTGTGTTCTTTTTGCCCTAATCTGGCAATAG | 693 | 45.17 | MSSGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSNDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLFLLIGFCVLFALIWQ | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3109359 | 3110051 | - | Lag0004345.1 | Lac6g0376 | 610145 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0376 | 230 | CDD | RING-HC_AtRMA-like | 28 | 72 | - | - | |
| Lac6g0376 | 230 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lac6g0376 | 230 | SUPERFAMILY | RING/U-box | 26 | 83 | - | - | |
| Lac6g0376 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 71 | IPR001841 | - | |
| Lac6g0376 | 230 | MobiDBLite | consensus disorder prediction | 84 | 122 | - | - | |
| Lac6g0376 | 230 | SMART | ring_2 | 30 | 70 | IPR001841 | - | |
| Lac6g0376 | 230 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 70 | IPR018957 | GO:0046872(InterPro) | |
| Lac6g0376 | 230 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
| Lac6g0376 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 97 | IPR013083 | - | |
| Lac6g0376 | 230 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 9 | 221 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g1276 | Lac-Chr2:10544530 | Lac6g0376 | Lac-Chr6:3109359 | 1.50E-24 | dispersed | |
| Lac6g0376 | Lac-Chr6:3109359 | Lac9g2160 | Lac-Chr9:41077296 | 6.40E-27 | dispersed | |
| Lac10g2647 | Lac-Chr10:40621768 | Lac6g0376 | Lac-Chr6:3109359 | 1.20E-26 | transposed | |
| Lac11g0556 | Lac-Chr11:5690174 | Lac6g0376 | Lac-Chr6:3109359 | 9.10E-22 | transposed | |
| Lac1g2477 | Lac-Chr1:46218958 | Lac6g0376 | Lac-Chr6:3109359 | 1.80E-74 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g0376 | K10666 | - | csv:101221027 | 418.698 |