Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0390 ATGACCTCCGACGGCGCCACTTCTGCCTCCACTTGCCGCCGGAAGCCTTCCTGGAGGGAGCGGGAGAATAATCGGACCAGAGAGCGGCGGAGGAGAGCCATCGCGGCTAAGATTTACTCCGGCCTCAGGGCTCAGGGCAACTTCAATCTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGAAGCTGGCTGGACCGTCGAAGATGACGGAACCACTTATCGGAAGGGATGCAAGCCTCCCCCAATTGACATTGTTGGCACTTCCACCAAAATCACCCCCTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCTAGTCCTATGGCATCCTACCAAGTCAGCCCCTCCTCCTCCTCTTTCCCGAGCCCGTCCCGTTTGGACGCCAACAATCCATCGAACCTCATTCCATATCTTCGCCAAGCGATTCCGATATCCCTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGGACTCCACAGCCATTCCCCAATTGGGAGGTCACTGCTAAAGAATCCTTGTCCTCCTTGAATTACCCTTTCTTTGCAGTATCTGCCCCGGCTAGCCCAACTCGCCCTCAGCTGCATACTCCCGCCACAATCCACGAATGTGACGAATCGGAATCATCCACCAATGATTCCAGTCAATGGGCACTTCTCCGTGCCTATGCGCCTTCTTCATCGACAATGCCAACATCTCCCACATTCAATCTTGTGAAGCCTGCTGACCACCAGCATGCTCTGCACGGTGGTTTCATCAAAGAAAATGGACGAGGAAACGAATTCGAGTTCTTGGGCTGCAAGGTTAAGCCCTGGGAAGGGGAGAAGATCCATGAAGTCGGATTGGAGGATTTGGAGCTCACGCTCGGTAGCAGTAAGGCTCGAAGCTAA 939 53.35 MTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEDDGTTYRKGCKPPPIDIVGTSTKITPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDANNPSNLIPYLRQAIPISLPPLRISNSAPVTPPLSSPASRTPQPFPNWEVTAKESLSSLNYPFFAVSAPASPTRPQLHTPATIHECDESESSTNDSSQWALLRAYAPSSSTMPTSPTFNLVKPADHQHALHGGFIKENGRGNEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSSKARS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3198662 3200007 + Lag0004359.1 Lac6g0390 610159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0390 312 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 12 311 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lac6g0390 312 MobiDBLite consensus disorder prediction 93 132 - -
Lac6g0390 312 MobiDBLite consensus disorder prediction 14 30 - -
Lac6g0390 312 MobiDBLite consensus disorder prediction 1 30 - -
Lac6g0390 312 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 136 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2882 Lac-Chr1:49746057 Lac6g0390 Lac-Chr6:3198662 3.60E-89 dispersed
Lac5g2412 Lac-Chr5:42779044 Lac6g0390 Lac-Chr6:3198662 3.50E-47 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23987 PF05687 BES1_N 2.20E-62 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0390 K14503 - csv:101219853 520.005