Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0390 | ATGACCTCCGACGGCGCCACTTCTGCCTCCACTTGCCGCCGGAAGCCTTCCTGGAGGGAGCGGGAGAATAATCGGACCAGAGAGCGGCGGAGGAGAGCCATCGCGGCTAAGATTTACTCCGGCCTCAGGGCTCAGGGCAACTTCAATCTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGAAGCTGGCTGGACCGTCGAAGATGACGGAACCACTTATCGGAAGGGATGCAAGCCTCCCCCAATTGACATTGTTGGCACTTCCACCAAAATCACCCCCTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCTAGTCCTATGGCATCCTACCAAGTCAGCCCCTCCTCCTCCTCTTTCCCGAGCCCGTCCCGTTTGGACGCCAACAATCCATCGAACCTCATTCCATATCTTCGCCAAGCGATTCCGATATCCCTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGGACTCCACAGCCATTCCCCAATTGGGAGGTCACTGCTAAAGAATCCTTGTCCTCCTTGAATTACCCTTTCTTTGCAGTATCTGCCCCGGCTAGCCCAACTCGCCCTCAGCTGCATACTCCCGCCACAATCCACGAATGTGACGAATCGGAATCATCCACCAATGATTCCAGTCAATGGGCACTTCTCCGTGCCTATGCGCCTTCTTCATCGACAATGCCAACATCTCCCACATTCAATCTTGTGAAGCCTGCTGACCACCAGCATGCTCTGCACGGTGGTTTCATCAAAGAAAATGGACGAGGAAACGAATTCGAGTTCTTGGGCTGCAAGGTTAAGCCCTGGGAAGGGGAGAAGATCCATGAAGTCGGATTGGAGGATTTGGAGCTCACGCTCGGTAGCAGTAAGGCTCGAAGCTAA | 939 | 53.35 | MTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEDDGTTYRKGCKPPPIDIVGTSTKITPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDANNPSNLIPYLRQAIPISLPPLRISNSAPVTPPLSSPASRTPQPFPNWEVTAKESLSSLNYPFFAVSAPASPTRPQLHTPATIHECDESESSTNDSSQWALLRAYAPSSSTMPTSPTFNLVKPADHQHALHGGFIKENGRGNEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSSKARS | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3198662 | 3200007 | + | Lag0004359.1 | Lac6g0390 | 610159 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0390 | 312 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 12 | 311 | IPR033264 | GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro) | |
Lac6g0390 | 312 | MobiDBLite | consensus disorder prediction | 93 | 132 | - | - | |
Lac6g0390 | 312 | MobiDBLite | consensus disorder prediction | 14 | 30 | - | - | |
Lac6g0390 | 312 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Lac6g0390 | 312 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 13 | 136 | IPR008540 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2882 | Lac-Chr1:49746057 | Lac6g0390 | Lac-Chr6:3198662 | 3.60E-89 | dispersed | |
Lac5g2412 | Lac-Chr5:42779044 | Lac6g0390 | Lac-Chr6:3198662 | 3.50E-47 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23987 | PF05687 | BES1_N | 2.20E-62 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g0390 | K14503 | - | csv:101219853 | 520.005 |