Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0390 ATGACCTCCGACGGCGCCACTTCTGCCTCCACTTGCCGCCGGAAGCCTTCCTGGAGGGAGCGGGAGAATAATCGGACCAGAGAGCGGCGGAGGAGAGCCATCGCGGCTAAGATTTACTCCGGCCTCAGGGCTCAGGGCAACTTCAATCTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGAAGCTGGCTGGACCGTCGAAGATGACGGAACCACTTATCGGAAGGGATGCAAGCCTCCCCCAATTGACATTGTTGGCACTTCCACCAAAATCACCCCCTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCTAGTCCTATGGCATCCTACCAAGTCAGCCCCTCCTCCTCCTCTTTCCCGAGCCCGTCCCGTTTGGACGCCAACAATCCATCGAACCTCATTCCATATCTTCGCCAAGCGATTCCGATATCCCTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGGACTCCACAGCCATTCCCCAATTGGGAGGTCACTGCTAAAGAATCCTTGTCCTCCTTGAATTACCCTTTCTTTGCAGTATCTGCCCCGGCTAGCCCAACTCGCCCTCAGCTGCATACTCCCGCCACAATCCACGAATGTGACGAATCGGAATCATCCACCAATGATTCCAGTCAATGGGCACTTCTCCGTGCCTATGCGCCTTCTTCATCGACAATGCCAACATCTCCCACATTCAATCTTGTGAAGCCTGCTGACCACCAGCATGCTCTGCACGGTGGTTTCATCAAAGAAAATGGACGAGGAAACGAATTCGAGTTCTTGGGCTGCAAGGTTAAGCCCTGGGAAGGGGAGAAGATCCATGAAGTCGGATTGGAGGATTTGGAGCTCACGCTCGGTAGCAGTAAGGCTCGAAGCTAA 939 53.35 MTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEDDGTTYRKGCKPPPIDIVGTSTKITPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDANNPSNLIPYLRQAIPISLPPLRISNSAPVTPPLSSPASRTPQPFPNWEVTAKESLSSLNYPFFAVSAPASPTRPQLHTPATIHECDESESSTNDSSQWALLRAYAPSSSTMPTSPTFNLVKPADHQHALHGGFIKENGRGNEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSSKARS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3198662 3200007 + Lag0004359.1 Lac6g0390 610159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0390 312 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 12 311 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lac6g0390 312 MobiDBLite consensus disorder prediction 93 132 - -
Lac6g0390 312 MobiDBLite consensus disorder prediction 14 30 - -
Lac6g0390 312 MobiDBLite consensus disorder prediction 1 30 - -
Lac6g0390 312 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 136 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0390 K14503 - - csv:101219853 520.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2882 Lac-Chr1:49746057 Lac6g0390 Lac-Chr6:3198662 3.60E-89 dispersed
Lac5g2412 Lac-Chr5:42779044 Lac6g0390 Lac-Chr6:3198662 3.50E-47 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0390 . 1 311 BZR Transcription Factor Family AT1G75080 60.6 2.9e-89 326.2
Lac1g2882 . 28 319 BZR Transcription Factor Family AT1G75080 58.6 9.5e-80 294.7
Lac6g0390 . 1 312 BZR Transcription Factor Family AT1G19350 59.1 2.1e-87 320.1
Lac1g2882 . 28 317 BZR Transcription Factor Family AT1G19350 58.9 3.4e-77 286.2
Lac1g2882 . 6 319 BZR Transcription Factor Family AT3G50750 57.5 4.7e-77 285.4
Lac6g0390 . 1 311 BZR Transcription Factor Family AT3G50750 50.6 7.3e-62 235.0
Lac5g2412 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 4.9e-50 195.3
Lac10g0987 . 80 328 BZR Transcription Factor Family AT4G18890 52.0 9.2e-49 191.0
Lac5g2412 . 1 325 BZR Transcription Factor Family AT1G78700 73.4 1.4e-117 420.2
Lac10g0987 . 1 328 BZR Transcription Factor Family AT1G78700 68.1 3.5e-103 372.5
Lac1g2882 . 28 200 BZR Transcription Factor Family AT4G36780 78.0 3.7e-63 239.2
Lac6g0390 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 2.6e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007707 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23987 PF05687 BES1_N 2.20E-62 No_clan Lac TF