Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0394 | ATGGTATCGGCAGAGAACAATTCTCCAACGGCGGCGGTTGCAGCATCTTCCTCGCCGGGAGTTGAAACCGAAATCATCGACGCCGTGGCTCCGGCGAAGAAGAAGCGGAATCTCCCCGGAATGCCAGATCCAGCGGCGGAAGTGATAGCTCTGTCGCCAAAATCGCTCCTAGCGACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTCCACCGGCGCGGCCACAACTTGCCTTGGAAGCTCCGGCAGCGGACGAGCAATGAGATTCGGAAACGAGTCTACATCTGTCCAGAGCCGTCTTGCGTCCATCACAATCCGGCAAGGGCACTCGGCGACCTGACCGGCATCAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTTCAATCGGATTGGAAAGCGCACATGAAAACCTGCGGAACTAGAGAGTATAAATGCGATTGCGGAACCTTGTTTTCCAGGAGGGACAGTTTCATTACGCATCGGGCTTTCTGTGATGCTTTGGCGTTCGCAAGCTCGGATTCGAACGCGGCGGCGGCTGCGGTTGGTTCATCGCCACTGACGCCATCGGCCACCGTGCTGTCGCCTGCTTTGTCCATTCACAGCTCAGAACCAGTACCGGACTATCCCATCGGACCTCCGCCATTAGCGCCGGCAGTCACAAGCTTCACCTCCGCCACCTCCGCCTCCCCCTCCAATGCAACCAACCCAACAAACGGCAGTGCCATCGGTGGCGGTACAAGCGTTTTCGCCGGTGTATTTGCTTCTCCTCCCACTGTTAGCAGTGCCCCTCATCAACCCGCCCATCAAATCGCCACCTCCGGCAGCCGATCAGACGGCGCCAAAAATTACCCAACCACCGTCGTTGAGCCCACGTCGCTCTCTCTCTCAACCTCCCTCTTCCTCTCCTGTAGAGCCTCAGCCTCGTCAGGTTCGGGCTCGGGCTCGTCCATCTTTCACGACCATCCACCACATTACTCGCCGTCGCCGCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCGCCTCCAACGCCGCATCTTTGCTGCGAGGCTCCGGGCTCTCAATGTCGCCGTCTCCCGGCCAAGACACTTCCGCCGCCGCTATGACGGCTGGACTCGGACATGGATTTGGAAGCGAGCCCATGACAAGAGATCTCCTTGGACTCGGCATGGGCGGTGGCGGTGGCGGAGGTGGGGCTACCGGCGGCGGATTTTCTGCTCTTTTCACGTCTTTCGGTGGTGGGTGTGACGTTGAAGCTGCTGCACCTTATTACAGCGGCGGCGGCGGCGGGAGTAATGGTTTATGA | 1398 | 59.23 | MVSAENNSPTAAVAASSSPGVETEIIDAVAPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNAAAAAVGSSPLTPSATVLSPALSIHSSEPVPDYPIGPPPLAPAVTSFTSATSASPSNATNPTNGSAIGGGTSVFAGVFASPPTVSSAPHQPAHQIATSGSRSDGAKNYPTTVVEPTSLSLSTSLFLSCRASASSGSGSGSSIFHDHPPHYSPSPQPAAMSATALLQKAAQMGVTASNAASLLRGSGLSMSPSPGQDTSAAAMTAGLGHGFGSEPMTRDLLGLGMGGGGGGGGATGGGFSALFTSFGGGCDVEAAAPYYSGGGGGSNGL | 465 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3228385 | 3231106 | - | Lag0004363.1 | Lac6g0394 | 610163 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0394 | 465 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 382 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lac6g0394 | 465 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 84 | IPR013087 | - | |
Lac6g0394 | 465 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 159 | IPR036236 | - | |
Lac6g0394 | 465 | MobiDBLite | consensus disorder prediction | 333 | 354 | - | - | |
Lac6g0394 | 465 | Pfam | Zinc-finger of C2H2 type | 62 | 84 | IPR013087 | - | |
Lac6g0394 | 465 | Gene3D | Classic Zinc Finger | 117 | 193 | - | - | |
Lac6g0394 | 465 | MobiDBLite | consensus disorder prediction | 281 | 303 | - | - | |
Lac6g0394 | 465 | FunFam | protein indeterminate-domain 12-like | 41 | 109 | - | - | |
Lac6g0394 | 465 | Gene3D | Classic Zinc Finger | 62 | 106 | - | - | |
Lac6g0394 | 465 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 116 | 195 | - | - | |
Lac6g0394 | 465 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 99 | 133 | - | - | |
Lac6g0394 | 465 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 137 | 161 | - | - | |
Lac6g0394 | 465 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 164 | 198 | - | - | |
Lac6g0394 | 465 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
Lac6g0394 | 465 | SMART | c2h2final6 | 138 | 158 | IPR013087 | - | |
Lac6g0394 | 465 | SMART | c2h2final6 | 103 | 133 | IPR013087 | - | |
Lac6g0394 | 465 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2894 | Lac-Chr1:49846427 | Lac6g0394 | Lac-Chr6:3228385 | 7.60E-54 | dispersed | |
Lac6g0394 | Lac-Chr6:3228385 | Lac9g2004 | Lac-Chr9:39675566 | 6.30E-82 | dispersed | |
Lac10g0312 | Lac-Chr10:2411785 | Lac6g0394 | Lac-Chr6:3228385 | 1.20E-60 | transposed | |
Lac2g0223 | Lac-Chr2:1709421 | Lac6g0394 | Lac-Chr6:3228385 | 5.00E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23988 | PF12874 | zf-met | 0.0033 | CL0361 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g0394 | K25869 | - | csv:101217471 | 594.349 |