Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0394 ATGGTATCGGCAGAGAACAATTCTCCAACGGCGGCGGTTGCAGCATCTTCCTCGCCGGGAGTTGAAACCGAAATCATCGACGCCGTGGCTCCGGCGAAGAAGAAGCGGAATCTCCCCGGAATGCCAGATCCAGCGGCGGAAGTGATAGCTCTGTCGCCAAAATCGCTCCTAGCGACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTCCACCGGCGCGGCCACAACTTGCCTTGGAAGCTCCGGCAGCGGACGAGCAATGAGATTCGGAAACGAGTCTACATCTGTCCAGAGCCGTCTTGCGTCCATCACAATCCGGCAAGGGCACTCGGCGACCTGACCGGCATCAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTTCAATCGGATTGGAAAGCGCACATGAAAACCTGCGGAACTAGAGAGTATAAATGCGATTGCGGAACCTTGTTTTCCAGGAGGGACAGTTTCATTACGCATCGGGCTTTCTGTGATGCTTTGGCGTTCGCAAGCTCGGATTCGAACGCGGCGGCGGCTGCGGTTGGTTCATCGCCACTGACGCCATCGGCCACCGTGCTGTCGCCTGCTTTGTCCATTCACAGCTCAGAACCAGTACCGGACTATCCCATCGGACCTCCGCCATTAGCGCCGGCAGTCACAAGCTTCACCTCCGCCACCTCCGCCTCCCCCTCCAATGCAACCAACCCAACAAACGGCAGTGCCATCGGTGGCGGTACAAGCGTTTTCGCCGGTGTATTTGCTTCTCCTCCCACTGTTAGCAGTGCCCCTCATCAACCCGCCCATCAAATCGCCACCTCCGGCAGCCGATCAGACGGCGCCAAAAATTACCCAACCACCGTCGTTGAGCCCACGTCGCTCTCTCTCTCAACCTCCCTCTTCCTCTCCTGTAGAGCCTCAGCCTCGTCAGGTTCGGGCTCGGGCTCGTCCATCTTTCACGACCATCCACCACATTACTCGCCGTCGCCGCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCGCCTCCAACGCCGCATCTTTGCTGCGAGGCTCCGGGCTCTCAATGTCGCCGTCTCCCGGCCAAGACACTTCCGCCGCCGCTATGACGGCTGGACTCGGACATGGATTTGGAAGCGAGCCCATGACAAGAGATCTCCTTGGACTCGGCATGGGCGGTGGCGGTGGCGGAGGTGGGGCTACCGGCGGCGGATTTTCTGCTCTTTTCACGTCTTTCGGTGGTGGGTGTGACGTTGAAGCTGCTGCACCTTATTACAGCGGCGGCGGCGGCGGGAGTAATGGTTTATGA 1398 59.23 MVSAENNSPTAAVAASSSPGVETEIIDAVAPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNAAAAAVGSSPLTPSATVLSPALSIHSSEPVPDYPIGPPPLAPAVTSFTSATSASPSNATNPTNGSAIGGGTSVFAGVFASPPTVSSAPHQPAHQIATSGSRSDGAKNYPTTVVEPTSLSLSTSLFLSCRASASSGSGSGSSIFHDHPPHYSPSPQPAAMSATALLQKAAQMGVTASNAASLLRGSGLSMSPSPGQDTSAAAMTAGLGHGFGSEPMTRDLLGLGMGGGGGGGGATGGGFSALFTSFGGGCDVEAAAPYYSGGGGGSNGL 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3228385 3231106 - Lag0004363.1 Lac6g0394 610163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0394 465 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 382 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac6g0394 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lac6g0394 465 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Lac6g0394 465 MobiDBLite consensus disorder prediction 333 354 - -
Lac6g0394 465 Pfam Zinc-finger of C2H2 type 62 84 IPR013087 -
Lac6g0394 465 Gene3D Classic Zinc Finger 117 193 - -
Lac6g0394 465 MobiDBLite consensus disorder prediction 281 303 - -
Lac6g0394 465 FunFam protein indeterminate-domain 12-like 41 109 - -
Lac6g0394 465 Gene3D Classic Zinc Finger 62 106 - -
Lac6g0394 465 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Lac6g0394 465 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Lac6g0394 465 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Lac6g0394 465 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 198 - -
Lac6g0394 465 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lac6g0394 465 SMART c2h2final6 138 158 IPR013087 -
Lac6g0394 465 SMART c2h2final6 103 133 IPR013087 -
Lac6g0394 465 SMART c2h2final6 62 84 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2894 Lac-Chr1:49846427 Lac6g0394 Lac-Chr6:3228385 7.60E-54 dispersed
Lac6g0394 Lac-Chr6:3228385 Lac9g2004 Lac-Chr9:39675566 6.30E-82 dispersed
Lac10g0312 Lac-Chr10:2411785 Lac6g0394 Lac-Chr6:3228385 1.20E-60 transposed
Lac2g0223 Lac-Chr2:1709421 Lac6g0394 Lac-Chr6:3228385 5.00E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23988 PF12874 zf-met 0.0033 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0394 K25869 - csv:101217471 594.349