Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0415 | ATGTCGAAGCAGAAGTCGAAGAAGATGGGATTATTAGGGATATCAATGTGCGGTAGAGATCAGGAGCGAGAGATTGAGCAGTTATCCAGAGACGGCAGCCACTACAGTCTCACCGGCGGAATCCTGCCACCGCTCGGCGTCAATGGTCGAAAAAATCGAAGAGTCAAACTCCGTCCTCATATAATCTCGCCGTTCGATTACCACTACAGACTTTGGGAGACGTTTCTGATAGTTCTAGTACTCTATACGGCCTGGGTTTGCCCGTTTGAGTTCGGCTTTCTCAAGACGACCGGAGGAGTCCTTGCTGTAATCGATAATGCTGTTAATGGAATTTTCGCCATCGATATAGTTTTGACCTTCTTTGTCGCATATTTAGACAAATCTACTTACCTGCTCGTCGACGAACCTAAGCTGATTGCTATGCGATATGCCAAAACCTGGTTGGTTCTCGATGTTATCTCCATTATTCCGTCGGAATTGGCTCGGAGTATTCTCCCTCCTTCTGCTCAGGCTTATGGCTACTTCAATATGCTTCGTCTGTGGCGTCTTCGACGAGTCAGTTCAATGTTCGCCAGGATGGAAAAGGACAGGCACTTCAACTATTTCTGGGTTCGATGCGCGAAGCTTATATTTGTGTGTCTGTTTACGGTTCATTTTGCTGGGTGCTGCTTTTATCTTATTGGTTCAGACTTTAAGGACCCTAAAAAGGTATGGTTGACCTTATTCTATGAAGACTATAATAAAGAGAGTTTGTGGGCGCGTTATGTGACTGCAATTTACTGGTCAATTGCCACTCTCACAACCACTGGCTATGGCGATTTGCATGCTGTAAATGATAGAGAGATGACATTTATCATATGTTACATGTTTTTTATTCTGGGGTTGCAAGCTTACCTGATTGGAAATATGACTAACTTGGTCGTCCATGGCACTAGTCGAACCAGGAAATTTAGGGACACCATACAAGCTGCCTCAAATTTCGCCCAAAGAAATCAACTACCTGTTCGGCTGCAAGAACAGATGCTTGCTCATCTGTGTTTGAAATTCAGGACTGATTTAGAGGGATTACAACAGCAAGAGACAGTTGATTCTCTTCCAAAAGCCATTAGATCTAGCATCGCCCACCATCTCTTCTATTCACTTGTTGATAGTGCTTATTTGTTTAATGGGGTGTCAACCGACTTGATGTTTCAACTGGTAACAGAAATGAAGGCTGAGTACTTCCCTCCCAAAGAAGACATCATCTTGCAGAATGAAGCACCTTCTGATTTCTACATAGTTGTCACCGGCACAGCGGATCTTATCATACGAAGAAACGGAGTAGAAGAGATCATCGGTGAAGCAAAGACAGGAGATGTCATTGGTGAGATAGGCGTGCTTTGTTATCAACCACAACTGTTTACAGTTCGAACCAGCCGTTTGAGTCAATTGTTGCGTTTGAATCGCTCATCGTTTTTTAACTTGGTACAAGCAAGCGTTGGGGACGGGACAATAATAATGGACAATCTCCTTAAGCACCTGAAGGAGATAAAAGACCCCATCATGGAGGAAATTGTGCATGAATCAGCACAGTCATTGACTCAGTCTGGAATGGAAATGCCTCTCAATTTACACTACGCAGCAGAGAGTGGCGATGACTTATTGTTGCATCAGTTGCTAAAGCAGGGTTCACAACCGAATGAAGTAGATGGTAGTAGCGGGAAGACAGCACTTCATCTTGCAGCAGCTAGAGGAAACGAACATTGTGTAGTTCTACTCCTAGAGAATGGCGCAGACCCGAACCGAAGAGACTTTGAAGGAAACGTTCCCTTATGGCAAGCAATACGAGGGAAGCATGAGTCTATTGTTAAGCTTCTAATGGACAATGGTGCCAACATTTCTTCAGGCGACGTTGCTCAATTTGCATGCGCTGCTGCAGAGCAGAACAGCATAGATATGCTCCAATCCATTGTCCAATGTGGTGGAGACGTAACACTGTCGAGAAGCAATGGGACTACAGCTCTTCACCTGGCAGTATGTGAAGGAAACAGCGAAATGGTTAAGTTCCTTTTAGAGCAAGGGGCTGACATTGATAAGCCAGATGTTCATGGATGGACTCCTCGAGCATTGGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTGGTAAACAATCTATGAACAAACCATCATCCATCGTCCATATTCCACAAAATCCCGAACCAAATTACCTACGGAAGTTTCAGAGCGAATCGAACATGCCTCGGTTTTCTCAAGACTCTAGCATGACTCCTGTTCGAGAATCAAATTATTCTGACATGCCTCCTCGAAGGAGAAGAAGCAACAATTACCAAAACTCGCTTGTTGGGTTCATGTCCACTATCAATAACGGTGAAAGAGACGTACTACAACCTACATCAATCAATTTTAGCAATAGTCAGGGGGTAAGGGTGGCTTATCAGGCAAGAGTTACTCTCAGTTGCCCTGAAAAGGGAGAAGTTGCTGGAAAGCTTGTGCTTTTACCCAGATCCATCCAAGAACTACTTGAAATTGGTGCCAAAAAATTTGGGATCTCTTTAACAAAGGTTTTAACTCAAGAAGGAGCTGAAGTTGAGGATGTAAACCTTCTCAGAGATGGCGATCGCCTCGTCCTTGTGAGTGACGCCGGTGCCGCCATTCCCAGTAGCCGTCAAGTATCATAG | 2688 | 44.38 | MSKQKSKKMGLLGISMCGRDQEREIEQLSRDGSHYSLTGGILPPLGVNGRKNRRVKLRPHIISPFDYHYRLWETFLIVLVLYTAWVCPFEFGFLKTTGGVLAVIDNAVNGIFAIDIVLTFFVAYLDKSTYLLVDEPKLIAMRYAKTWLVLDVISIIPSELARSILPPSAQAYGYFNMLRLWRLRRVSSMFARMEKDRHFNYFWVRCAKLIFVCLFTVHFAGCCFYLIGSDFKDPKKVWLTLFYEDYNKESLWARYVTAIYWSIATLTTTGYGDLHAVNDREMTFIICYMFFILGLQAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPVRLQEQMLAHLCLKFRTDLEGLQQQETVDSLPKAIRSSIAHHLFYSLVDSAYLFNGVSTDLMFQLVTEMKAEYFPPKEDIILQNEAPSDFYIVVTGTADLIIRRNGVEEIIGEAKTGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMDNLLKHLKEIKDPIMEEIVHESAQSLTQSGMEMPLNLHYAAESGDDLLLHQLLKQGSQPNEVDGSSGKTALHLAAARGNEHCVVLLLENGADPNRRDFEGNVPLWQAIRGKHESIVKLLMDNGANISSGDVAQFACAAAEQNSIDMLQSIVQCGGDVTLSRSNGTTALHLAVCEGNSEMVKFLLEQGADIDKPDVHGWTPRALADHQGHEEIKELFSGKQSMNKPSSIVHIPQNPEPNYLRKFQSESNMPRFSQDSSMTPVRESNYSDMPPRRRRSNNYQNSLVGFMSTINNGERDVLQPTSINFSNSQGVRVAYQARVTLSCPEKGEVAGKLVLLPRSIQELLEIGAKKFGISLTKVLTQEGAEVEDVNLLRDGDRLVLVSDAGAAIPSSRQVS | 895 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3378262 | 3383958 | + | Lag0004384.1 | Lac6g0415 | 610184 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0415 | 895 | Pfam | Cyclic nucleotide-binding domain | 406 | 491 | IPR000595 | - | |
| Lac6g0415 | 895 | ProSiteProfiles | Ankyrin repeat profile. | 663 | 695 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | ProSiteProfiles | Ankyrin repeat profile. | 566 | 598 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | ProSiteProfiles | Ankyrin repeat region circular profile. | 566 | 597 | - | - | |
| Lac6g0415 | 895 | Gene3D | Jelly Rolls | 355 | 528 | IPR014710 | - | |
| Lac6g0415 | 895 | ProSiteProfiles | KHA domain profile. | 818 | 895 | IPR021789 | - | |
| Lac6g0415 | 895 | SMART | cnmp_10 | 387 | 504 | IPR000595 | - | |
| Lac6g0415 | 895 | MobiDBLite | consensus disorder prediction | 747 | 764 | - | - | |
| Lac6g0415 | 895 | FunFam | Potassium channel KAT3 | 71 | 309 | - | - | |
| Lac6g0415 | 895 | SUPERFAMILY | Voltage-gated potassium channels | 64 | 308 | - | - | |
| Lac6g0415 | 895 | SUPERFAMILY | Ankyrin repeat | 536 | 716 | IPR036770 | - | |
| Lac6g0415 | 895 | FunFam | Potassium channel KAT2 | 375 | 511 | - | - | |
| Lac6g0415 | 895 | Gene3D | - | 533 | 718 | IPR036770 | - | |
| Lac6g0415 | 895 | SUPERFAMILY | cAMP-binding domain-like | 312 | 507 | IPR018490 | - | |
| Lac6g0415 | 895 | ProSiteProfiles | Ankyrin repeat region circular profile. | 599 | 630 | - | - | |
| Lac6g0415 | 895 | Gene3D | - | 70 | 308 | - | - | |
| Lac6g0415 | 895 | Pfam | KHA, dimerisation domain of potassium ion channel | 818 | 880 | IPR021789 | - | |
| Lac6g0415 | 895 | MobiDBLite | consensus disorder prediction | 747 | 776 | - | - | |
| Lac6g0415 | 895 | CDD | CAP_ED | 387 | 490 | IPR000595 | - | |
| Lac6g0415 | 895 | SMART | ANK_2a | 663 | 692 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | SMART | ANK_2a | 599 | 628 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | SMART | ANK_2a | 630 | 659 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | SMART | ANK_2a | 566 | 595 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | SMART | ANK_2a | 532 | 561 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | Pfam | Ankyrin repeats (3 copies) | 537 | 628 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | Pfam | Ankyrin repeats (3 copies) | 637 | 715 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | ProSiteProfiles | Ankyrin repeat profile. | 599 | 631 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | PRINTS | EAG/ELK/ERG potassium channel family signature | 105 | 115 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac6g0415 | 895 | PRINTS | EAG/ELK/ERG potassium channel family signature | 82 | 89 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac6g0415 | 895 | PRINTS | EAG/ELK/ERG potassium channel family signature | 281 | 292 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac6g0415 | 895 | PRINTS | EAG/ELK/ERG potassium channel family signature | 255 | 272 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac6g0415 | 895 | PRINTS | EAG/ELK/ERG potassium channel family signature | 299 | 308 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac6g0415 | 895 | PRINTS | EAG/ELK/ERG potassium channel family signature | 116 | 125 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac6g0415 | 895 | PANTHER | POTASSIUM CHANNEL AKT1 | 24 | 879 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Lac6g0415 | 895 | Pfam | Ion transport protein | 69 | 314 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac6g0415 | 895 | PRINTS | Ankyrin repeat signature | 679 | 693 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | PRINTS | Ankyrin repeat signature | 567 | 582 | IPR002110 | GO:0005515(InterPro) | |
| Lac6g0415 | 895 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 387 | 506 | IPR000595 | - | |
| Lac6g0415 | 895 | ProSiteProfiles | Ankyrin repeat region circular profile. | 663 | 694 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0844 | Lac-Chr3:6773853 | Lac6g0415 | Lac-Chr6:3378262 | 1.70E-285 | dispersed | |
| Lac5g2498 | Lac-Chr5:43492883 | Lac6g0415 | Lac-Chr6:3378262 | 2.70E-112 | dispersed | |
| Lac6g0415 | Lac-Chr6:3378262 | Lac8g1926 | Lac-Chr8:37568654 | 1.50E-76 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g0415 | K21867 | - | csv:101217334 | 1368.21 |