Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0444 ATGGCTACGCCAGTTGAGCCTCCAAATGGGGTTAGATCCCAAGGGAAGCATTACTATTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCCATCAAGCCTATTGGCCGAGGAGCATATGGTATTGTGTGTTCTTCTGTGAATAGGGAAACAAACGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTCGAGAATCGTATCGATGCCCTTCGGACTTTGCGTGAATTGAAGCTCCTTAGGCATCTTCGCCACGAAAATGTGATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGTTTCAAAGATGTTTATTTGGTTTATGAACTGATGGATACAGATCTTCATCAGATTATTAAGTCTTCTCAAACTCTTACCAATGACCACTGCCAATATTTTCTCTTTCAGTTGCTCCGAGGCCTAAAGTATTTGCACTCTGCAAACATTCTACATAGAGACTTGAAGCCTGGGAACCTCCTCGTCAATGCGAATTGTGATCTCAAGATATGTGATTTCGGGTTAGCGCGTACGAGCAACGGCAAGAATCAATTTATGACAGAGTATGTCGTAACTCGCTGGTATCGAGCCCCAGAACTGCTGCTCTGCTGTGAGAATTATGGGACATCGATTGACGTGTGGTCTGTAGGATGCATCTTTGCCGAGCTTCTCGGTAGGAAACCTATCTTCCCCGGTACAGAATGTTTGAATCAACTCAAACTGATAATCAACATACTGGGTAGCCAGAGAGAGGAAGATCTTGAGTTCATAGACAACCCAAAGGCAAGGAGGTATATAAAATCCCTCCCATACTCTCCTGGGGCTCCTCTTCCCCGTCTTTATCCGAACGCTCATCCTCTAGCAATCGATCTACTACAAAAGATGCTTGTCTTTGACCCATCAAAGAGGATTAGTGTAACTGAAGCATTGCAACATCCTTACATGGCCCCACTGTATGATCCAAACAGCAATCCTCCAGCTCAGGTACCGATCGATCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAGGAAATGCTTCATTACCACCCTGAAGGTCTGGAAGAACATGCAGAAATGACATGTTTCCATCCTGAACCTACTACGAGTAGTACCGTGGTGTATTCCTGA 1161 43.76 MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNPKARRYIKSLPYSPGAPLPRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPYMAPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEGLEEHAEMTCFHPEPTTSSTVVYS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3627440 3629926 + Lag0004413.1 Lac6g0444 610213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0444 386 FunFam Mitogen-activated protein kinase 18 126 - -
Lac6g0444 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 357 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lac6g0444 386 FunFam Mitogen-activated protein kinase 116 345 - -
Lac6g0444 386 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0444 386 CDD STKc_TEY_MAPK 26 361 - -
Lac6g0444 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g0444 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0444 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Lac6g0444 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0444 386 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Lac6g0444 386 SMART serkin_6 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0444 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524(InterPro)
Lac6g0444 386 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2093 Lac-Chr5:39574639 Lac6g0444 Lac-Chr6:3627440 1.40E-169 dispersed
Lac6g0257 Lac-Chr6:2082394 Lac6g0444 Lac-Chr6:3627440 1.10E-30 dispersed
Lac6g0444 Lac-Chr6:3627440 Lac7g2614 Lac-Chr7:44676305 1.30E-112 dispersed
Lac6g0444 Lac-Chr6:3627440 Lac12g1654 Lac-Chr12:31883864 2.10E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86254 PF00069 Pkinase 1.10E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0444 K20535 - csv:101213478 761.14