Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0459 | ATGTTGAAACCAAGCAAGCAGCTCAACAACAAAAGGGCTCCTTCCCAGGCCACTTCCAGGAAGGGCTGTATGAGGGGCAAGGGCGGCCCTGAGAACGCTTCCTGCACTTACAAGGGCGTTCGCCAGAGGACTTGGGGCAAATGGGTTGCTGAGATTCGTGAGCCCAACCGTGGGGCTCGCCTCTGGCTTGGCACTTTCGACACTTCCCATGATGCTGCCATGGCTTATGACAATGCTGCTCGACGCCTCTATGGCTCTGAGGCCAAACTCAATCTCCCTCATCTCTCTTCCTCTTCCAATGCTGCTGCTGCTGCTGCTGCAACCACAGCAACCCAGATGCCCCAATTGCAGAATCATCCTCCTCAGATGATGCTTCCTGTTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTGACAGTGCTTCTGCTTCTGCTTCTGCTGCTGCTGCTCCTGCAGAGGAAAACAATGGTGGTGGTGGTGGGGGGATGGGATTTGGAGAGGAGGAAATTGGGGGGCTTTGGAGGTCTATGAGTATTAATTTGGATGATTCTATTTGGGTTGAGGCAGCCATGTCTTTGGACTTCCCTATCATGGAAGATCAGGGTCATCAGGGCTTTTTTGCTGCTAATTTGGTGGATGGAAATGGATGGGATACACTGCAATGGTGTTTGTGA | 672 | 51.79 | MLKPSKQLNNKRAPSQATSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSEAKLNLPHLSSSSNAAAAAAATTATQMPQLQNHPPQMMLPVSASSSSSSSSDSASASASAAAAPAEENNGGGGGGMGFGEEEIGGLWRSMSINLDDSIWVEAAMSLDFPIMEDQGHQGFFAANLVDGNGWDTLQWCL | 223 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3751800 | 3752471 | + | Lag0004428.1 | Lac6g0459 | 610228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0459 | 223 | MobiDBLite | consensus disorder prediction | 106 | 163 | - | - | |
| Lac6g0459 | 223 | PRINTS | Ethylene responsive element binding protein signature | 37 | 48 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0459 | 223 | PRINTS | Ethylene responsive element binding protein signature | 59 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0459 | 223 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 9 | 146 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
| Lac6g0459 | 223 | FunFam | Ethylene-responsive transcription factor 2 | 35 | 94 | - | - | |
| Lac6g0459 | 223 | SUPERFAMILY | DNA-binding domain | 36 | 94 | IPR016177 | GO:0003677(InterPro) | |
| Lac6g0459 | 223 | Pfam | AP2 domain | 37 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0459 | 223 | SMART | rav1_2 | 36 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0459 | 223 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Lac6g0459 | 223 | ProSiteProfiles | AP2/ERF domain profile. | 36 | 93 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0459 | 223 | CDD | AP2 | 35 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0459 | 223 | Gene3D | AP2/ERF domain | 36 | 94 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0459 | 223 | MobiDBLite | consensus disorder prediction | 106 | 144 | - | - | |
| Lac6g0459 | 223 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g0459 | Lac-Chr6:3751800 | Lac8g2871 | Lac-Chr8:45837693 | 7.00E-31 | dispersed | |
| Lac10g2503 | Lac-Chr10:38910185 | Lac6g0459 | Lac-Chr6:3751800 | 4.20E-27 | transposed | |
| Lac2g0179 | Lac-Chr2:1361992 | Lac6g0459 | Lac-Chr6:3751800 | 1.10E-48 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23992 | PF00847 | AP2 | 2.60E-14 | CL0081 | Lac | TF |
Pathway information