Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0459 ATGTTGAAACCAAGCAAGCAGCTCAACAACAAAAGGGCTCCTTCCCAGGCCACTTCCAGGAAGGGCTGTATGAGGGGCAAGGGCGGCCCTGAGAACGCTTCCTGCACTTACAAGGGCGTTCGCCAGAGGACTTGGGGCAAATGGGTTGCTGAGATTCGTGAGCCCAACCGTGGGGCTCGCCTCTGGCTTGGCACTTTCGACACTTCCCATGATGCTGCCATGGCTTATGACAATGCTGCTCGACGCCTCTATGGCTCTGAGGCCAAACTCAATCTCCCTCATCTCTCTTCCTCTTCCAATGCTGCTGCTGCTGCTGCTGCAACCACAGCAACCCAGATGCCCCAATTGCAGAATCATCCTCCTCAGATGATGCTTCCTGTTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTGACAGTGCTTCTGCTTCTGCTTCTGCTGCTGCTGCTCCTGCAGAGGAAAACAATGGTGGTGGTGGTGGGGGGATGGGATTTGGAGAGGAGGAAATTGGGGGGCTTTGGAGGTCTATGAGTATTAATTTGGATGATTCTATTTGGGTTGAGGCAGCCATGTCTTTGGACTTCCCTATCATGGAAGATCAGGGTCATCAGGGCTTTTTTGCTGCTAATTTGGTGGATGGAAATGGATGGGATACACTGCAATGGTGTTTGTGA 672 51.79 MLKPSKQLNNKRAPSQATSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSEAKLNLPHLSSSSNAAAAAAATTATQMPQLQNHPPQMMLPVSASSSSSSSSDSASASASAAAAPAEENNGGGGGGMGFGEEEIGGLWRSMSINLDDSIWVEAAMSLDFPIMEDQGHQGFFAANLVDGNGWDTLQWCL 223
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 3751800 3752471 + Lag0004428.1 Lac6g0459 610228
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0459 223 MobiDBLite consensus disorder prediction 106 163 - -
Lac6g0459 223 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0459 223 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0459 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 146 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Lac6g0459 223 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Lac6g0459 223 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677(InterPro)
Lac6g0459 223 Pfam AP2 domain 37 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0459 223 SMART rav1_2 36 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0459 223 MobiDBLite consensus disorder prediction 1 17 - -
Lac6g0459 223 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0459 223 CDD AP2 35 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0459 223 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0459 223 MobiDBLite consensus disorder prediction 106 144 - -
Lac6g0459 223 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0459 Lac-Chr6:3751800 Lac8g2871 Lac-Chr8:45837693 7.00E-31 dispersed
Lac10g2503 Lac-Chr10:38910185 Lac6g0459 Lac-Chr6:3751800 4.20E-27 transposed
Lac2g0179 Lac-Chr2:1361992 Lac6g0459 Lac-Chr6:3751800 1.10E-48 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23992 PF00847 AP2 2.60E-14 CL0081 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0459 - - - 0.0