Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0466 ATGGATCTGTTGCGATCCGAGCCTATGCAATTGGTGCAGCTGATCATTCCTAATGAATCGGCGCACCGGACGATCTCTTACCTCGGCGGCCTCGGCCTCTTTCAATTCAACGATCTCAATGCATCTAGAAGCCCATTCCAGCGGACATATGCTGCTCAGATTAAAAGATGTGGGGAAATGGCTCGCAAGCTACGGTTTTTCAGGGAGCAAATGGCAAGGGCTGGTTTATCACCATCATCAAATTCTTATGGGGCTCCTGATTTTGATCTGGATAAATTGGAGGTTAAACTTGGAGAATTTGAGGCAGAGTTGTTAGAGATAAAGGACAACAACGAGAAGTTACAGCGCAATTATAGTGAGCTATTGGAATATAAGCTTGTACTCCAGAAGGTTGGTGAGTTTTTCCATCTAGCTCAAAGGATCGCTGGAGCTCAGCAAAGAGAAGCGGAAGTGCAGCAAAACGGGGAAGGATCCATTGACAGTCCCTTATTATTGGAACAAGAAATGACAACGGATTCAACGAAACAAGTTAAACTAGGATATACCAGTGGTCTAGTTCCGAGAGAAAAGGCAATGGCTTTTGAAAGGATTTTGTTTCGTTCAACTAGGGGCAATGTGTATATGAGACAAGCTGTGGTTGATGGTTCCGTCACTGACCCCGTATCTGGGGAGAAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCTGGAGAGAGAGCAAAGAATAAAATTCTGAAAATATGTGAAGCTTTTGGTGCAAACCGTTATCCGTTCACTGATGACTTGGGCAAACAATTTCAGATGATTACAGAGTCCTTTTTACTCCTTCTCACATCCCTCCCACTTCATTTTGGTGGCCTCGTGATTGGATCTCTTAAGCAAAGGAATATGACCCTTCTCACTAAATGGTGCTGGTGCTGGAGAGTGGAGATTTTCAACGGAGAAACTTGCTCTTTGGAGAATGGTGGTGGTAATGGCCATAATGTCAGATTTTGGAAGGATAGGTGGCTGAGAGAGTCCACCTTAAAAGAAGATTTTACTGACATTTTTAATCTGTCGTTGAATCAAGATGCTACGCTGGTCGATGCATGCAACGAAGACTTGGGGACTTGGAATTTGAGTATTAGGAGAGGGATTTTTGATTGGGAGATGCAGGCTTGGATTGGGTTGACAGAGAAGCTAGAAGACTTTCGGTTGGGCCAAGGAGAAGATAAAATCCGGCGGTCCTTGGACCCTGGGGGACACGGTTTCCACTAA 1257 44.31 MDLLRSEPMQLVQLIIPNESAHRTISYLGGLGLFQFNDLNASRSPFQRTYAAQIKRCGEMARKLRFFREQMARAGLSPSSNSYGAPDFDLDKLEVKLGEFEAELLEIKDNNEKLQRNYSELLEYKLVLQKVGEFFHLAQRIAGAQQREAEVQQNGEGSIDSPLLLEQEMTTDSTKQVKLGYTSGLVPREKAMAFERILFRSTRGNVYMRQAVVDGSVTDPVSGEKVEKNVFVIFYSGERAKNKILKICEAFGANRYPFTDDLGKQFQMITESFLLLLTSLPLHFGGLVIGSLKQRNMTLLTKWCWCWRVEIFNGETCSLENGGGNGHNVRFWKDRWLRESTLKEDFTDIFNLSLNQDATLVDACNEDLGTWNLSIRRGIFDWEMQAWIGLTEKLEDFRLGQGEDKIRRSLDPGGHGFH 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3819683 3825839 - Lag0004435.1 Lac6g0466 610235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0466 418 Pfam V-type ATPase 116kDa subunit family 27 271 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac6g0466 418 PANTHER VACUOLAR PROTON ATPASES 1 271 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Lac6g0466 418 Coils Coil 90 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0466 Lac-Chr6:3819683 Lac9g2546 Lac-Chr9:44116756 2.20E-70 dispersed
Lac6g0466 Lac-Chr6:3819683 Lac4g1440 Lac-Chr4:32843009 9.30E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0466 K02154 - csv:101209817 485.337