Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0470 ATGAAGATTCAATGTGATGTCTGTGAAAAAGGCGATGCGTCGGTGTTCTGCACGGCGGACGAGGCGGCGCTCTGTAATCTCTGTGATCACCGTGTCCACCATGCCAATAAGCTCGCTTCGAAGCACCGGCGGTTTTCTCTGCTCCGCCCTGCCGCGGCGGAGGCCCCTGTCTGCGATGTTTGCCGGGAGCGGCGAGGGTTCTTGTTCTGTCAGCAGGATAGGGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAGCATGATAGGTTTCTTCTAACTGGGATTAAGCTTTCCGCCACCGCTGCTCTGTACGCGCCGCCTCCCTCCGACGAGAAACCGATCGGAACTGGTGGTCGTGTTGGGTCTGATCTCAAGTCAAAGGGTTCTGTCAAGAAGGCAGCTGCTGTTTCTGCTGCGCCAACTGGATGCACACCAACTGTTTGCGTTAATGCCCCAACGAACATACCTCCGGCGGAAGCCGTGAACAAGGGCGGCGGAGGTCAGATTCCGACCGGCGGTGGAGGCTTGGCCAGCAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCACTTTGAAGACTTTCTTGATTCCTCTGTTCCTCCCCCTTTTGTGGAGTGTGAAGGGCTGGGATTGCCATTTGTGGAAGGTGATTTTAATGGTGGTTTTTCACCATCGGAGTGTTTTGAGCTTTGGGTCCCTCAGGGGCCACCACCGGCGCTGTATGGTTCAGGATTAATGATGAATAATGGGTTGAAGTTGAAGGACACAAAGGAATTGGTAGCAAATCTAAATTCATCAAAAGTCAATAGAGTGTGGACAGATGATGGTTTCACTGTGCCACAGATCACAAGTACTACTACCCCATCTGCAGGCTTTAAGAGATCCAGACCTTTTTGGTATAACAATAACTAA 942 51.49 MKIQCDVCEKGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRPAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSATAALYAPPPSDEKPIGTGGRVGSDLKSKGSVKKAAAVSAAPTGCTPTVCVNAPTNIPPAEAVNKGGGGQIPTGGGGLASSISEYLMETLPGWHFEDFLDSSVPPPFVECEGLGLPFVEGDFNGGFSPSECFELWVPQGPPPALYGSGLMMNNGLKLKDTKELVANLNSSKVNRVWTDDGFTVPQITSTTTPSAGFKRSRPFWYNNN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3872291 3873457 - Lag0004439.1 Lac6g0470 610239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0470 313 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Lac6g0470 313 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270(InterPro)
Lac6g0470 313 Gene3D Classic Zinc Finger 1 94 - -
Lac6g0470 313 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lac6g0470 313 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lac6g0470 313 CDD Bbox1_BBX-like 57 100 IPR049808 -
Lac6g0470 313 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac6g0470 313 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lac6g0470 313 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Lac6g0470 313 FunFam B-box zinc finger protein 21 1 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2421 Lac-Chr5:42833531 Lac6g0470 Lac-Chr6:3872291 6.10E-30 dispersed
Lac6g0470 Lac-Chr6:3872291 Lac9g1735 Lac-Chr9:36988123 6.60E-43 dispersed
Lac4g1778 Lac-Chr4:36729827 Lac6g0470 Lac-Chr6:3872291 2.80E-30 transposed
Lac1g2983 Lac-Chr1:50557601 Lac6g0470 Lac-Chr6:3872291 1.60E-16 wgd
Lac2g0172 Lac-Chr2:1303501 Lac6g0470 Lac-Chr6:3872291 9.20E-58 wgd
Lac4g1427 Lac-Chr4:32701744 Lac6g0470 Lac-Chr6:3872291 2.20E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23994 PF00643 zf-B_box 1.40E-05 No_clan Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0470 - - - 0.0