Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0479 ATGTCGTCAGTCTTCAGCGGCGATGAAACAGCTCCTTTCTTTGGCTTTCTCGGCGCCGCTGCGGCCCTGGTTTTCTCCTGTATGGGTGCCGCTTACGGGACGGCGAAGAGCGGGGTCGGAGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTCTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACAGGGATTAACCCTAAGGCTAAATCTTATTACCTCTTTGATGGCTACGCGCATCTCTCCTCTGGTCTTGCTTGCGGCCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTCGGCGATGCCGGCGTTAGGGCCAATGCACAACAGCCTAAACTTTTTGTTGGGATGATTCTCATTCTGATTTTCGCCGAAGCACTTGCCCTTTATGGACTCATTGTTGGTATTATTCTCTCCTCCCGAGCTGGTCAGTCGAGAGCTGATTAA 498 52.01 MSSVFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3967474 3969121 - Lag0004448.1 Lac6g0479 610248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0479 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 159 - GO:0016021(PANTHER)
Lac6g0479 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lac6g0479 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lac6g0479 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Lac6g0479 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
Lac6g0479 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Lac6g0479 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Lac6g0479 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac6g0479 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac6g0479 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac6g0479 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac6g0479 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Lac6g0479 165 Gene3D - 11 162 IPR035921 -
Lac6g0479 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0915 Lac-Chr2:7186948 Lac6g0479 Lac-Chr6:3967474 7.30E-61 dispersed
Lac6g0479 Lac-Chr6:3967474 Lac6g0480 Lac-Chr6:3971623 7.70E-75 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0479 K02155 - csv:101209079 286.96