Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0480 | ATGTCTTCAACCTTCAGCGGCGATGAAACGGCGCCCTTCTTCGGCTTTCTCGGCGCTGCTGCAGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTACGGGACGGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCGGAGCTGGTCATGAAGTCGATTGTTCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGGCTTATTATTGCTGTGATTATTAGTACAGGGATTAACCCTAAGGCCAAATCTTACTACCTCTTCGATGGCTACGCGCATCTCTCCTCTGGGCTTGCTTGTGGCCTTGCTGGTCTGTCCGCTGGCATGGCTATCGGGATCGTCGGCGATGCTGGTGTTAGAGCCAATGCGCAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTCTAATTTTTGCTGAAGCGCTGGCACTCTATGGACTTATTGTTGGCATTATTCTATCTTCCCGAGCTGGTCAGTCAAGAGCTGATTAA | 498 | 51.61 | MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3971623 | 3973214 | - | Lag0004449.1 | Lac6g0480 | 610249 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0480 | 165 | Pfam | ATP synthase subunit C | 17 | 76 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Lac6g0480 | 165 | Pfam | ATP synthase subunit C | 97 | 155 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Lac6g0480 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 89 | 156 | - | - | |
| Lac6g0480 | 165 | FunFam | V-type proton ATPase proteolipid subunit | 11 | 162 | - | - | |
| Lac6g0480 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 13 | 77 | IPR035921 | - | |
| Lac6g0480 | 165 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 13 | 80 | - | - | |
| Lac6g0480 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 134 | 157 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac6g0480 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 107 | 133 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac6g0480 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 56 | 80 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac6g0480 | 165 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 30 | 54 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Lac6g0480 | 165 | SUPERFAMILY | F1F0 ATP synthase subunit C | 87 | 156 | IPR035921 | - | |
| Lac6g0480 | 165 | Gene3D | - | 11 | 162 | IPR035921 | - | |
| Lac6g0480 | 165 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 3 | 159 | - | GO:0016021(PANTHER) | |
| Lac6g0480 | 165 | NCBIfam | V-type ATPase subunit C | 13 | 121 | IPR011555 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g0480 | K02155 | - | - | mdm:114824771 | 287.73 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g0479 | Lac-Chr6:3967474 | Lac6g0480 | Lac-Chr6:3971623 | 7.70E-75 | tandem |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lac6g0237 | . | 47 | 1042 | Primary Pumps ATPases(2) | AT1G10130 | 83.5 | 0.0e+00 | 1632.5 | |
| Lac9g2546 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.9 | 0.0e+00 | 1338.9 | |
| Lac4g1440 | . | 10 | 824 | Primary Pumps ATPases(2) | AT2G28520 | 56.3 | 9.2e-262 | 900.6 | |
| Lac6g0465 | . | 2 | 519 | Primary Pumps ATPases(2) | AT2G28520 | 69.9 | 4.9e-215 | 745.3 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G28520 | 52.2 | 7.4e-70 | 263.1 | |
| Lac4g1440 | . | 6 | 829 | Primary Pumps ATPases(2) | AT2G21410 | 67.8 | 0.0e+00 | 1110.5 | |
| Lac9g2546 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.4 | 4.7e-298 | 1021.1 | |
| Lac6g0465 | . | 9 | 524 | Primary Pumps ATPases(2) | AT2G21410 | 78.3 | 3.1e-241 | 832.4 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G21410 | 69.0 | 1.6e-101 | 368.2 | |
| Lac4g1440 | . | 8 | 829 | Primary Pumps ATPases(2) | AT4G39080 | 68.6 | 0.0e+00 | 1108.6 | |
| Lac9g2546 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.8 | 2.3e-297 | 1018.8 | |
| Lac6g0465 | . | 9 | 524 | Primary Pumps ATPases(2) | AT4G39080 | 78.1 | 1.7e-239 | 826.6 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT4G39080 | 70.1 | 3.7e-101 | 367.1 | |
| Lac6g0480 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac6g0479 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac6g0480 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.1e-66 | 249.6 | |
| Lac6g0479 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.7e-66 | 249.2 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT1G75630 | 78.5 | 5.9e-53 | 204.9 | |
| Lac6g0480 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.5e-74 | 274.2 | |
| Lac6g0479 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.5e-73 | 272.3 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT2G16510 | 99.3 | 7.0e-60 | 227.6 | |
| Lac6g0480 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.8e-52 | 202.6 | |
| Lac6g0479 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.8e-52 | 200.7 | |
| Lac2g0915 | . | 9 | 103 | Primary Pumps ATPases(2) | AT1G19910 | 98.9 | 7.3e-38 | 154.1 | |
| Lac2g0627 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.6 | 1.9e-71 | 266.5 | |
| Lac6g0682 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.6 | 3.2e-71 | 265.8 | |
| Lac6g0480 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac6g0479 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac2g0627 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.2 | 5.8e-75 | 278.1 | |
| Lac6g0682 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 72.9 | 5.0e-71 | 265.0 | |
| Lac7g2667 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 81.2 | 0.0e+00 | 1684.8 | |
| Lac7g2667 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 81.0 | 0.0e+00 | 1682.5 | |
| Lac6g0237 | . | 47 | 1042 | Primary Pumps ATPases(2) | AT1G10130 | 83.5 | 0.0e+00 | 1632.5 | |
| Lac7g2667 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.0 | 0.0e+00 | 1328.2 | |
| Lac3g1976 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.7 | 3.0e-268 | 921.4 | |
| Lac8g2013 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 84.0 | 1.5e-182 | 636.3 | |
| Lac9g1002 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 3.7e-116 | 415.2 | |
| Lac1g2331 | . | 3 | 432 | Primary Pumps ATPases(2) | AT3G42050 | 72.4 | 2.7e-183 | 639.0 | |
| Lac6g0480 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.5e-74 | 274.2 | |
| Lac6g0479 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.5e-73 | 272.3 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT2G16510 | 99.3 | 7.0e-60 | 227.6 | |
| Lac3g1976 | . | 6 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 96.3 | 2.7e-269 | 924.9 | |
| Lac8g0070 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 76.5 | 2.9e-65 | 245.7 | |
| Lac3g1976 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 2.1e-266 | 915.2 | |
| Lac9g2546 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.9 | 0.0e+00 | 1338.9 | |
| Lac4g1440 | . | 10 | 824 | Primary Pumps ATPases(2) | AT2G28520 | 56.3 | 9.2e-262 | 900.6 | |
| Lac6g0465 | . | 2 | 519 | Primary Pumps ATPases(2) | AT2G28520 | 69.9 | 4.9e-215 | 745.3 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G28520 | 52.2 | 7.4e-70 | 263.1 | |
| Lac8g0547 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 9.4e-192 | 666.8 | |
| Lac8g0070 | . | 1 | 225 | Primary Pumps ATPases(2) | AT4G11150 | 74.8 | 1.1e-84 | 310.5 | |
| Lac4g3091 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1175.6 | |
| Lac3g1976 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.7 | 3.0e-268 | 921.4 | |
| Lac3g1976 | . | 6 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 96.3 | 2.7e-269 | 924.9 | |
| Lac3g1976 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 96.0 | 2.1e-266 | 915.2 | |
| Lac8g2013 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 84.0 | 1.5e-182 | 636.3 | |
| Lac9g1002 | . | 1 | 261 | Primary Pumps ATPases(2) | AT3G58730 | 81.6 | 3.7e-116 | 415.2 | |
| Lac8g0070 | . | 1 | 225 | Primary Pumps ATPases(2) | AT4G11150 | 74.8 | 1.1e-84 | 310.5 | |
| Lac8g0070 | . | 1 | 226 | Primary Pumps ATPases(2) | AT3G08560 | 69.6 | 2.6e-76 | 282.7 | |
| Lac8g0070 | . | 1 | 176 | Primary Pumps ATPases(2) | AT1G64200 | 76.5 | 2.9e-65 | 245.7 | |
| Lac1g2331 | . | 3 | 432 | Primary Pumps ATPases(2) | AT3G42050 | 72.4 | 2.7e-183 | 639.0 | |
| Lac9g2546 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.9 | 0.0e+00 | 1338.9 | |
| Lac4g1440 | . | 10 | 824 | Primary Pumps ATPases(2) | AT2G28520 | 56.3 | 9.2e-262 | 900.6 | |
| Lac6g0465 | . | 2 | 519 | Primary Pumps ATPases(2) | AT2G28520 | 69.9 | 4.9e-215 | 745.3 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G28520 | 52.2 | 7.4e-70 | 263.1 | |
| Lac4g1440 | . | 6 | 829 | Primary Pumps ATPases(2) | AT2G21410 | 67.8 | 0.0e+00 | 1110.5 | |
| Lac9g2546 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.4 | 4.7e-298 | 1021.1 | |
| Lac6g0465 | . | 9 | 524 | Primary Pumps ATPases(2) | AT2G21410 | 78.3 | 3.1e-241 | 832.4 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT2G21410 | 69.0 | 1.6e-101 | 368.2 | |
| Lac4g1440 | . | 8 | 829 | Primary Pumps ATPases(2) | AT4G39080 | 68.6 | 0.0e+00 | 1108.6 | |
| Lac9g2546 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.8 | 2.3e-297 | 1018.8 | |
| Lac6g0465 | . | 9 | 524 | Primary Pumps ATPases(2) | AT4G39080 | 78.1 | 1.7e-239 | 826.6 | |
| Lac6g0466 | . | 1 | 271 | Primary Pumps ATPases(2) | AT4G39080 | 70.1 | 3.7e-101 | 367.1 | |
| Lac6g0480 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac6g0479 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 2.1e-60 | 229.2 | |
| Lac6g0480 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.8e-52 | 202.6 | |
| Lac6g0479 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 6.8e-52 | 200.7 | |
| Lac2g0915 | . | 9 | 103 | Primary Pumps ATPases(2) | AT1G19910 | 98.9 | 7.3e-38 | 154.1 | |
| Lac6g0480 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac6g0479 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 5.9e-60 | 227.6 | |
| Lac6g0480 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.1e-66 | 249.6 | |
| Lac6g0479 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 2.7e-66 | 249.2 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT1G75630 | 78.5 | 5.9e-53 | 204.9 | |
| Lac6g0480 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 6.5e-74 | 274.2 | |
| Lac6g0479 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.5e-73 | 272.3 | |
| Lac2g0915 | . | 9 | 146 | Primary Pumps ATPases(2) | AT2G16510 | 99.3 | 7.0e-60 | 227.6 | |
| Lac2g0627 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.2 | 5.8e-75 | 278.1 | |
| Lac6g0682 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 72.9 | 5.0e-71 | 265.0 | |
| Lac2g0627 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.6 | 1.9e-71 | 266.5 | |
| Lac6g0682 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 85.6 | 3.2e-71 | 265.8 | |
| Lac8g0547 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 8.1e-199 | 690.3 | |
| Lac8g0547 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 9.4e-192 | 666.8 | |
| Lac7g2667 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 81.2 | 0.0e+00 | 1684.8 | |
| Lac7g2667 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.0 | 0.0e+00 | 1328.2 | |
| Lac6g0237 | . | 47 | 1042 | Primary Pumps ATPases(2) | AT1G10130 | 83.5 | 0.0e+00 | 1632.5 | |
| Lac7g2667 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 81.0 | 0.0e+00 | 1682.5 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000593 | 4 | 3 | 2 | 4 | 4 | 2 | 6 | 2 | 1 | 3 | 2 | 3 | 4 | 3 | 3 | 5 | 3 | 7 | 5 | 3 | 3 | 4 | 3 | 3 | 2 | 3 | 3 | 6 | 3 | 3 | 102 |