Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0492 ATGTCCAACGCCGTCGAAGATCTCCTCCTCCGCCACCGCCACTCCGACTTCCGATTTCAACTCCTCCGCTCTCACTCTCTCCATCGCCACATGTCGTCTTCGTCTTCTTCTTCTTCTCCTGCAGCTCAACCTATTCCTCCGTGTTTCCTTCAGTATCATCGCCCTTCTCCGCCGTCGGATCAATCCAACGCCTGCGACGGCCGTCTCGCTCCCGACGCACATTCTACAGTTGCTACGCTCGACCTGAAACGAACATATGATATTAATGACTCTGAGGCTTCGGCTAGTAGACGAGCTGTAGCTTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACAAGTATCTAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAAAACTCAAAAATCAATAGATGAGCCGCTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATCTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTACGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAGAAAACCACGACCAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGCTGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAAGCACAGAAAGAACCTTTTTATAACAGAAGAAGATATCTTGCAAATTCCTTGCTTCAAGAATCAGACACTCATAGCAGTTAAAGCCCCCCAAGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGATTGATCATCAAAAGCACCACTGGGCCAATCGATTTGTACCTCTTGAGGACTGAAAAACAAGGGTTGGAAGAAAACACCACCAAGCAAGGGAAAATGTCTTCACAACAGAATAAGAATCCTATGACATCTACCAACAATGCTTGTTCTTCTCTCCGGGAAGTTCATGGAATGCAGAGAATTTTACCTTTACATAATAATGTAGACGATGATTATTGGTTTCAATCAAATTCTCAAGTGAGTATTACACATTTATGGGGTGAAGAACACAACTTTTGA 1236 42.8 MSNAVEDLLLRHRHSDFRFQLLRSHSLHRHMSSSSSSSSPAAQPIPPCFLQYHRPSPPSDQSNACDGRLAPDAHSTVATLDLKRTYDINDSEASASRRAVASEQRMRSNDSSCEQVSSANEKQNKKLKLQKNSKSKTQKSIDEPLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLKAEVKSLYADERRLDELIRMKQELLRNLEENAKHRKNLFITEEDILQIPCFKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTEKQGLEENTTKQGKMSSQQNKNPMTSTNNACSSLREVHGMQRILPLHNNVDDDYWFQSNSQVSITHLWGEEHNF 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4115161 4119032 - Lag0004461.1 Lac6g0492 610261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0492 411 Gene3D - 150 222 IPR036388 -
Lac6g0492 411 SUPERFAMILY E2F-DP heterodimerization region 232 336 IPR037241 -
Lac6g0492 411 MobiDBLite consensus disorder prediction 346 366 - -
Lac6g0492 411 Coils Coil 247 270 - -
Lac6g0492 411 PANTHER TRANSCRIPTION FACTOR E2F 64 406 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lac6g0492 411 CDD E2F_DD 231 338 IPR032198 GO:0046983(InterPro)
Lac6g0492 411 MobiDBLite consensus disorder prediction 30 44 - -
Lac6g0492 411 MobiDBLite consensus disorder prediction 343 366 - -
Lac6g0492 411 MobiDBLite consensus disorder prediction 92 154 - -
Lac6g0492 411 MobiDBLite consensus disorder prediction 30 69 - -
Lac6g0492 411 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac6g0492 411 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac6g0492 411 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Lac6g0492 411 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Lac6g0492 411 FunFam E2F transcription factor 1 149 222 - -
Lac6g0492 411 MobiDBLite consensus disorder prediction 95 123 - -
Lac6g0492 411 Gene3D - 227 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2307 Lac-Chr1:44479315 Lac6g0492 Lac-Chr6:4115161 2.00E-59 dispersed
Lac6g0492 Lac-Chr6:4115161 Lac9g2731 Lac-Chr9:45486837 7.80E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23998 PF16421 E2F_CC-MB 7.90E-27 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0492 K06620 - csv:101211469 637.876