Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0492 ATGTCCAACGCCGTCGAAGATCTCCTCCTCCGCCACCGCCACTCCGACTTCCGATTTCAACTCCTCCGCTCTCACTCTCTCCATCGCCACATGTCGTCTTCGTCTTCTTCTTCTTCTCCTGCAGCTCAACCTATTCCTCCGTGTTTCCTTCAGTATCATCGCCCTTCTCCGCCGTCGGATCAATCCAACGCCTGCGACGGCCGTCTCGCTCCCGACGCACATTCTACAGTTGCTACGCTCGACCTGAAACGAACATATGATATTAATGACTCTGAGGCTTCGGCTAGTAGACGAGCTGTAGCTTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACAAGTATCTAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAAAACTCAAAAATCAATAGATGAGCCGCTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATCTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTACGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAGAAAACCACGACCAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAGATTAAAGGCTGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAAGCACAGAAAGAACCTTTTTATAACAGAAGAAGATATCTTGCAAATTCCTTGCTTCAAGAATCAGACACTCATAGCAGTTAAAGCCCCCCAAGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGATTGATCATCAAAAGCACCACTGGGCCAATCGATTTGTACCTCTTGAGGACTGAAAAACAAGGGTTGGAAGAAAACACCACCAAGCAAGGGAAAATGTCTTCACAACAGAATAAGAATCCTATGACATCTACCAACAATGCTTGTTCTTCTCTCCGGGAAGTTCATGGAATGCAGAGAATTTTACCTTTACATAATAATGTAGACGATGATTATTGGTTTCAATCAAATTCTCAAGTGAGTATTACACATTTATGGGGTGAAGAACACAACTTTTGA 1236 42.8 MSNAVEDLLLRHRHSDFRFQLLRSHSLHRHMSSSSSSSSPAAQPIPPCFLQYHRPSPPSDQSNACDGRLAPDAHSTVATLDLKRTYDINDSEASASRRAVASEQRMRSNDSSCEQVSSANEKQNKKLKLQKNSKSKTQKSIDEPLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGRLKAEVKSLYADERRLDELIRMKQELLRNLEENAKHRKNLFITEEDILQIPCFKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTEKQGLEENTTKQGKMSSQQNKNPMTSTNNACSSLREVHGMQRILPLHNNVDDDYWFQSNSQVSITHLWGEEHNF 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4115161 4119032 - Lag0004461.1 Lac6g0492 610261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0492 411 Gene3D - 150 222 IPR036388 -
Lac6g0492 411 SUPERFAMILY E2F-DP heterodimerization region 232 336 IPR037241 -
Lac6g0492 411 MobiDBLite consensus disorder prediction 346 366 - -
Lac6g0492 411 Coils Coil 247 270 - -
Lac6g0492 411 PANTHER TRANSCRIPTION FACTOR E2F 64 406 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Lac6g0492 411 CDD E2F_DD 231 338 IPR032198 GO:0046983(InterPro)
Lac6g0492 411 MobiDBLite consensus disorder prediction 30 44 - -
Lac6g0492 411 MobiDBLite consensus disorder prediction 343 366 - -
Lac6g0492 411 MobiDBLite consensus disorder prediction 92 154 - -
Lac6g0492 411 MobiDBLite consensus disorder prediction 30 69 - -
Lac6g0492 411 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac6g0492 411 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac6g0492 411 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Lac6g0492 411 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Lac6g0492 411 FunFam E2F transcription factor 1 149 222 - -
Lac6g0492 411 MobiDBLite consensus disorder prediction 95 123 - -
Lac6g0492 411 Gene3D - 227 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0492 K06620 - - csv:101211469 637.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2307 Lac-Chr1:44479315 Lac6g0492 Lac-Chr6:4115161 2.00E-59 dispersed
Lac6g0492 Lac-Chr6:4115161 Lac9g2731 Lac-Chr9:45486837 7.80E-60 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23998 PF16421 E2F_CC-MB 7.90E-27 No_clan Lac TF