Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0507 ATGGCGGCACGGGTTTCGTTTCTGTTGGGTCTTTCAACTCTGCTGCTGTTGGTTCCAGGTGGGTTTTCGACGAGCTTCACTTTTCTCAACAAATGTGGATTCACAGTCTGGCCGGGCGTTCTGTCGAACGGCGGCGTTCCACCGCTTCCCACTACCGGCTTCTCTCTCCAGACGGGAGAGTCCAAGACGCTGTCGGCGCCGGCGTCATGGGGTGGCAGGTTCTGGGGACGAACACTCTGTTCTGAAGATTCCACCGGGAAATTCACTTGCGCCACCGGCGACTGTGGCTCGAACAAACTCGAGTGCGCCGGAAATGGAGCGACGCCGCCGGCGACTCTGGCGGAGTTTACTCTCGACGGCTCCGGCGGGCTCGATTTCTTCGACGTTAGCCTGGTGGACGGTTACAATCTTCCGATGATGGTGGTGCCTCAGGGTGGCTCCGGCAACAACTGCACCAGCACCGGCTGCGTGGTGGATCTGAACGGCGCGTGTCCGTCGGAGCTACGCGTGACGAGCGCCGACGGAAGAGAGGGCGTCGCGTGTAAAAGCGCGTGTGATGCGTTCAACCAACCGCAATACTGTTGCACTGGCGCGTACCAAACACCGGACACCTGTCAGCCGTCGATGTACTCTCAGATCTTCAAGAGAGCGTGCCCACGCGCCTACAGCTACGCGTACGACGACAAGACGAGCACTTTCACATGCGCCAGTGCTGATTACGTCATCACCTTCTGTCCATCGCCAAACACCAGCCAAAAGTCATCGGAATTACAGAACTCACCGGCGACGGCGAACCCATCTACCGGCGGCGACGGATCAATGGTGTACGAAGGCGCATCTCTGATCCAAACCGACGCAGCGCCGCCACGCGTGGCCGGAATTTCAGCGGCCGGTGCGGTGGCGATTTGGTGGTTGTGGCAGCAGCTGTTCCTCTACTTCTAA 942 59.34 MAARVSFLLGLSTLLLLVPGGFSTSFTFLNKCGFTVWPGVLSNGGVPPLPTTGFSLQTGESKTLSAPASWGGRFWGRTLCSEDSTGKFTCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPQGGSGNNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNQPQYCCTGAYQTPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSELQNSPATANPSTGGDGSMVYEGASLIQTDAAPPRVAGISAAGAVAIWWLWQQLFLYF 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4256053 4257495 + Lag0004476.1 Lac6g0507 610276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0507 313 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Lac6g0507 313 MobiDBLite consensus disorder prediction 250 269 - -
Lac6g0507 313 SUPERFAMILY Osmotin, thaumatin-like protein 25 247 IPR037176 -
Lac6g0507 313 Gene3D Thaumatin 24 246 IPR037176 -
Lac6g0507 313 Pfam Thaumatin family 30 246 IPR001938 -
Lac6g0507 313 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lac6g0507 313 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Lac6g0507 313 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Lac6g0507 313 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Lac6g0507 313 SMART tha2 26 246 IPR001938 -
Lac6g0507 313 PANTHER OS03G0233200 PROTEIN 14 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Lac6g0507 313 CDD TLP-PA 25 245 - -
Lac6g0507 313 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0111 Lac-Chr5:904995 Lac6g0507 Lac-Chr6:4256053 1.20E-88 dispersed
Lac6g0507 Lac-Chr6:4256053 Lac9g1807 Lac-Chr9:37825473 7.20E-98 dispersed
Lac6g0507 Lac-Chr6:4256053 Lac6g0509 Lac-Chr6:4270948 9.10E-77 proximal
Lac1g3009 Lac-Chr1:50793277 Lac6g0507 Lac-Chr6:4256053 8.70E-85 wgd
Lac2g0137 Lac-Chr2:1062434 Lac6g0507 Lac-Chr6:4256053 1.70E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0507 - - - 0.0