Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0524 ATGGCAAACCTTCCTTTGGCATTTGCTTTCTCTCTTGCTCTCTGCAACTTCTTCTTTATTGTCAATGCATTTACCGCGTCGGGATGGAATCCCGCTCACGCTACCTTCTACGGCGAGAGCGATGCCTCGGGAACAATGGGCGGAGCTTGTGGGTACGGGAACTTGTACCAGACTGGGTACGGGACGAGGACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCATCGTGCGGGCAGTGCTTCAAGATCATGTGCGATTACAAGACGGATCCACGGTGGTGCGTGAAAGGGACGTCGGTGACGGTGACGGCGACCAATTTCTGCCCACCCAACTTCGCTCTGCCGAACAACAATGGCGGATGGTGCAACCCTCCGCTCAAGCACTTCGACATGGCCCAACCTGCTTGGGAGAAGATCGGCATTTACAGAGGCGGAATCATCCCTGTCCTCTACCAAAGAGTTCCTTGCGTAAAGAAAGGAGGTGTAAGATTCACAGTGAATGGAAGAGACTATTTTGAATTGGTATTGATAACCAATGTGGGAGGAGCTGGGGACATCCAATCAGTGTCCATAAAGGGCTCAAAATCCTCCAATTGGATGCCAATGTCAAGGAATTGGGGGGCCAATTGGCAATCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGGTCACCACCACCGATGGCCAGACCCAAGTTTTCAACAATGTTGTCCCTTCAAGTTGGAGGTTTGGCCAAACATTTGCAAGCAAGGTCCAATTCCGCTGA 774 51.94 MANLPLAFAFSLALCNFFFIVNAFTASGWNPAHATFYGESDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIMCDYKTDPRWCVKGTSVTVTATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLITNVGGAGDIQSVSIKGSKSSNWMPMSRNWGANWQSNSYLNGQSLSFKVTTTDGQTQVFNNVVPSSWRFGQTFASKVQFR 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4362739 4364993 + Lag0004493.1 Lac6g0524 610293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0524 257 SMART dpbb_1 64 152 IPR007112 -
Lac6g0524 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Lac6g0524 257 Gene3D - 162 257 IPR036749 -
Lac6g0524 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Lac6g0524 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Lac6g0524 257 SUPERFAMILY Barwin-like endoglucanases 17 180 IPR036908 -
Lac6g0524 257 CDD DPBB_EXPA_N 28 157 - -
Lac6g0524 257 FunFam Expansin 19 158 - -
Lac6g0524 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Lac6g0524 257 FunFam Expansin 162 256 - -
Lac6g0524 257 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Lac6g0524 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Lac6g0524 257 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Lac6g0524 257 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Lac6g0524 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576(InterPro)
Lac6g0524 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Lac6g0524 257 Gene3D - 19 157 IPR036908 -
Lac6g0524 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Lac6g0524 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Lac6g0524 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664(InterPro)
Lac6g0524 257 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Lac6g0524 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Lac6g0524 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664(InterPro)
Lac6g0524 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664(InterPro)
Lac6g0524 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664(InterPro)
Lac6g0524 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664(InterPro)
Lac6g0524 257 Pfam Lytic transglycolase 64 152 IPR009009 -
Lac6g0524 257 PANTHER EXPANSIN-A15 15 253 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0524 Lac-Chr6:4362739 Lac8g2843 Lac-Chr8:45632129 1.30E-92 dispersed
Lac6g0524 Lac-Chr6:4362739 Lac13g0330 Lac-Chr13:2362861 2.20E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0524 - - - 0.0