Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0525 ATGTCTCTCTTCACATTTCTTCTCCTCTTTTCTTCCTTCCTTCCCTCTCTCAATGCCTTGAGCTACCACTACTACGACCACACGTGCCCCGACCTCGAGTCGATCGTCGCCCGAGAAGTCCACTTGGCCGCCGTTAACGACAAGACCGTCCCTGCTGCACTGCTCCGAATGCACTTCCATGACTGTTTCATTAGAGGTTGTGATGGCTCTGTACTTCTCGACTCCAAGGGAAAGAACACTGCTGAAAAAGATGGCCCTCCCAATATTTCGTTGCATGCTTTTTATGTCATCGACAATGCCAAGAAAGCCATTGAATCTGCCTGCCCTGACGTCGTTTCTTGTGCTGATATCTTGGCCCTTGCTGCTCGAGATGCCGTTGCTTTGTCTGGAGGTCCTCATTGGCAAGTCCCAAAAGGAAGAAAAGATGGAAGAATCTCAAAAGCAACTGAAACCAGACAATTGCCTGCTCCCACATTCAACTTCTCTCAACTCCAACAAAGCTTCTCCCAAAGAGGACTTTCTATTCAAGATCTTGTTGCTCTTTCAGGCGGTCACACGTTGGGATTCGCCCACTGCTCGTCATTTCAAAACCGAATCCACAACTTCAACTCGACGCTCGACGTCGACCCGTCGCTGCAGCCGTCGTTCGCGGCCAGCCTCCGGAGCATATGTCCGGCTCACAACAAGGTGAAAAACGCAGGGTCCGCCATGGATTCAAGCTCCACAGTATTTGACAATGCATATTTCAAGGTGCTGCTTCAAGGGCAGAGCATTTTTTCTTCAGATCAATCTTTGCTTTCAACTCCCAAAACAAAGGCTTTGGTTTCTAAGTTCGCCAATGAACAACAGCTCTTTGAGAAGGCTTTTGTCAAGTCGATGGTCAAGATGAGTCGGATCGCCGGCGCCGGCGAAGAAGTCCGGCTGAACTGCAGGGTGGTCAGGTGA 945 49.95 MSLFTFLLLFSSFLPSLNALSYHYYDHTCPDLESIVAREVHLAAVNDKTVPAALLRMHFHDCFIRGCDGSVLLDSKGKNTAEKDGPPNISLHAFYVIDNAKKAIESACPDVVSCADILALAARDAVALSGGPHWQVPKGRKDGRISKATETRQLPAPTFNFSQLQQSFSQRGLSIQDLVALSGGHTLGFAHCSSFQNRIHNFNSTLDVDPSLQPSFAASLRSICPAHNKVKNAGSAMDSSSTVFDNAYFKVLLQGQSIFSSDQSLLSTPKTKALVSKFANEQQLFEKAFVKSMVKMSRIAGAGEEVRLNCRVVR 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4368056 4369410 + Lag0004494.1 Lac6g0525 610294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0525 314 Gene3D Peroxidase, domain 2 155 296 - -
Lac6g0525 314 PANTHER PEROXIDASE 25-RELATED 21 310 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac6g0525 314 FunFam Peroxidase 155 296 - -
Lac6g0525 314 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Lac6g0525 314 FunFam Peroxidase 23 161 - -
Lac6g0525 314 Pfam Peroxidase 38 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 CDD secretory_peroxidase 20 313 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac6g0525 314 PRINTS Plant peroxidase signature 130 145 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Plant peroxidase signature 92 105 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Plant peroxidase signature 111 121 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Plant peroxidase signature 176 188 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 Gene3D - 23 313 - -
Lac6g0525 314 SUPERFAMILY Heme-dependent peroxidases 20 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 ProSiteProfiles Plant heme peroxidase family profile. 19 314 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Haem peroxidase superfamily signature 130 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Haem peroxidase superfamily signature 112 129 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac6g0525 314 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0525 Lac-Chr6:4368056 Lac9g2886 Lac-Chr9:46771327 2.80E-65 dispersed
Lac1g3035 Lac-Chr1:51014104 Lac6g0525 Lac-Chr6:4368056 2.20E-118 transposed
Lac2g0521 Lac-Chr2:3899815 Lac6g0525 Lac-Chr6:4368056 5.60E-61 transposed
Lac5g2884 Lac-Chr5:47092470 Lac6g0525 Lac-Chr6:4368056 5.60E-98 transposed
Lac1g3020 Lac-Chr1:50898535 Lac6g0525 Lac-Chr6:4368056 5.70E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0525 K00430 - csv:101214403 547.354