Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0541 ATGAACGGTCATGATGCGGTGCCGTTGGTGTACGTTCACGGCGACCTCGATTTGAAGATCATTGAGGCGCGCCGTTTGCCTAATATGGATTTGCTAACCGAGCGTATTCGGCGGTTTTTTACTGTTTTTACTTCTTGTCGGAAACCGTTTTCCAAGCAGGAAACCGATCACCAGCACCACCGGAAGATTATTACTAGTGATCCTTATGTCACCGTTTGTCTTGCTGGAGCGACGGTTGCTCGGACGCGAGTTATTTCGAACTCGCAGAACCCTATCTGGAACGAGCACTTCAAAATTCCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCACGTGAAGGATAATGATGTGTTTGGTGCGGATATGATTGGTATTGCTACGGTTCCTGCGCGCCGAATTCTTTCTGGCGAAACCATAAATGATTGGTTTCCGATTATTGGTTCGTTTGGGAAACCGCCGAAACCGGATTCGGCTGTGCGTTTGGAAATGAAATTCACGAAGTGTGAGGACAATCCTCTTTACCGGTATGGCATTGCCGCCGATCCCGAGCATTTCGGCGTTCGGGATTGCTACTTTCCGGTACGGCACGGTGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCTGATTCCATATTGGAGAAGATTGAAATGGATAAGGGGAATGTGTTTCATCATGAGAATTGCTGGGAAGATATATGCCATGCAATTTTGGAGGCTCACCATTTAGTCTACATCGCCGGTTGGTCCATATATCATAAGGTGAAGCTGGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGGAATTTGAACTTGGGAGAGTTGCTTAAGTACAAGTCACAAGAAGGGGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCTCACAGCAAGTTCTTCATCAATACGACAGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCACTCTTCTGTGTCATGTGTGCTGTCACCCCGATATGCCAGCACCGCAGCCGTGAGCAAGGTTATCCCTAGAAGACCTTGCAACGTTCTCTCTCCGGCATTATCTTCCTTCCCTCCGACGAAACTTTGGATCGACGGTGCCTTCTCCAATTCGTGGAGGATTATGGTGATTTCTGCACCTGTAGCTCGAGGCCTGCAGTGA 1164 48.71 MNGHDAVPLVYVHGDLDLKIIEARRLPNMDLLTERIRRFFTVFTSCRKPFSKQETDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPIWNEHFKIPLAHPVSQVEFHVKDNDVFGADMIGIATVPARRILSGETINDWFPIIGSFGKPPKPDSAVRLEMKFTKCEDNPLYRYGIAADPEHFGVRDCYFPVRHGGSVTLYQDAHVPDSILEKIEMDKGNVFHHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASTAAVSKVIPRRPCNVLSPALSSFPPTKLWIDGAFSNSWRIMVISAPVARGLQ 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4491594 4495122 + Lag0004510.1 Lac6g0541 610310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0541 387 Gene3D C2 domain 12 173 IPR035892 -
Lac6g0541 387 ProSiteProfiles C2 domain profile. 1 143 IPR000008 -
Lac6g0541 387 PANTHER PHOSPHOLIPASE D 11 336 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac6g0541 387 Pfam C2 domain 15 144 IPR000008 -
Lac6g0541 387 CDD C2_plant_PLD 10 166 - -
Lac6g0541 387 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 167 IPR035892 -
Lac6g0541 387 SMART C2_3c 15 142 IPR000008 -
Lac6g0541 387 SUPERFAMILY Phospholipase D/nuclease 223 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0584 Lac-Chr5:6542642 Lac6g0541 Lac-Chr6:4491594 1.10E-63 dispersed
Lac6g0541 Lac-Chr6:4491594 Lac6g0638 Lac-Chr6:5414661 1.50E-57 dispersed
Lac6g0541 Lac-Chr6:4491594 Lac6g0543 Lac-Chr6:4517331 1.30E-43 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0541 K01115 - csv:101213442 634.795