Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0544 ATGAGGCCTTTTGGAGTGAACCAAAAGCAAAGCCATGAGGGTTATGCCCAAAGTGGACAATATCATACGATTGTGGATATATGTGTAGTGTCTCGTAATTCCTTATCAGTTGTTGGAACCCTTTTTACCCATCACCAGAAGTGCGTGATTGTGGATACACAAGCATCTGGAAATTACCGGAAGATAAGTGCTTTTATTGGAGGACTTGACCTTTGTGATGGTCGTTATGATACTCCTGAACATCGGTTGTTAAAAGATCTTGACACTGTATTTGAAGATGATTTTCATAATCCAACTTTTTCTGGAGGTACAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCTGCATATGATGTGCTGACTAACTTTGAACAACGATGGCGAAAAGCCATAAAATGGTCTGCATTAGGTCAGCGGTTCAAAAGAGTGTCTCATTGGCATGAAGACGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAGTTAGTCCCCAACGATGACCCTTTGTTATGGGTTTCCAAGGAAAATGATCCTGACAATTGGCATGTCCAGGTTTTCCGATCAATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTCGCAGAATCTTGTTTGTGCAAAAAATTTGGTTATTGACCAAAGCATTCAAACGGCATATATTCAAGCAATACGATCTGCCCAACACTTCATATACATTGAGAATCAATATTTTCTTGGATCATCGTTCGCATGGCCTTCATACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTAGCATTGAAGATCGCTAGTAAGATAAGAGCCAACGAGAGGTTTGCTGTATATGTTGTGATACCAATGTGGCCTGAAGGTGTTCCCACTTCTGTTTCTGTGCAAGAAATCCTGTTTTGGCAGGGCCAAACAATTCAAATGATGTATGAAGTCATTGCAAGAGAGTTGAAATATAAGAATCTCGAGAACGCACATCCTTTGGACTACTTAAACTTTTACTGTCTTGGTAATAGGGAACCGCACGAGGATGTATCATGTTCCTCCGGTCATTCTTCCAAGAGCGAAGATATGGTTTCAGATTCGCAAAAGTTCCGAAGATTCATGATATATGTACATGCGAAAGGAATGGTTGTTGATGATGAATATGTAATAGTAGGGTCTGCAAATATTAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCCAGTAACACATGGGGTAAGAAGAAACGACATCCACAAGGCCAGATTTATGGCTATAGAATGTCTCTCTGGGCCGAGCATTTGGGAAAGATTGATGGTTGCTTCAAGGAGCCTGAAAGCTTGGATTGTGTCAACACTGTCAACAAGATAGCTGAAGATAACTGGAAGAAATATACAGCAGCGGAATTTGTGCCGTTGCAAGGGCACCTGCTTAAGTACCCGATTGAGGTCAACCAATGTGGGAAGATTGGTCCGTTGAGTGGACACGAGACCTTCCCGGACGTCGGTGGTAAGGTCCTCGGAGCTCGATCTAACCTCCCTGATGCTCTTACTACATAA 1614 42.01 MRPFGVNQKQSHEGYAQSGQYHTIVDICVVSRNSLSVVGTLFTHHQKCVIVDTQASGNYRKISAFIGGLDLCDGRYDTPEHRLLKDLDTVFEDDFHNPTFSGGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKAIKWSALGQRFKRVSHWHEDALIKLERISWILSPSQLVPNDDPLLWVSKENDPDNWHVQVFRSIDSGSLKGFPKDVFQAESQNLVCAKNLVIDQSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYVVIPMWPEGVPTSVSVQEILFWQGQTIQMMYEVIARELKYKNLENAHPLDYLNFYCLGNREPHEDVSCSSGHSSKSEDMVSDSQKFRRFMIYVHAKGMVVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPSNTWGKKKRHPQGQIYGYRMSLWAEHLGKIDGCFKEPESLDCVNTVNKIAEDNWKKYTAAEFVPLQGHLLKYPIEVNQCGKIGPLSGHETFPDVGGKVLGARSNLPDALTT 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4523124 4526796 + Lag0004513.1 Lac6g0544 610313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0544 537 Gene3D Endonuclease Chain A 9 157 - -
Lac6g0544 537 SUPERFAMILY Phospholipase D/nuclease 228 463 - -
Lac6g0544 537 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 383 410 IPR001736 GO:0003824(InterPro)
Lac6g0544 537 Pfam Phospholipase D Active site motif 385 410 IPR001736 GO:0003824(InterPro)
Lac6g0544 537 PANTHER PHOSPHOLIPASE D 27 525 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac6g0544 537 Gene3D Endonuclease Chain A 207 430 - -
Lac6g0544 537 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 40 75 IPR001736 GO:0003824(InterPro)
Lac6g0544 537 SUPERFAMILY Phospholipase D/nuclease 38 146 - -
Lac6g0544 537 Pfam Phospholipase D C terminal 458 527 IPR024632 -
Lac6g0544 537 SMART pld_4 40 75 IPR001736 GO:0003824(InterPro)
Lac6g0544 537 SMART pld_4 383 410 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0585 Lac-Chr5:6561539 Lac6g0544 Lac-Chr6:4523124 4.60E-60 dispersed
Lac5g0587 Lac-Chr5:6605874 Lac6g0544 Lac-Chr6:4523124 1.70E-54 dispersed
Lac6g0544 Lac-Chr6:4523124 Lac6g2572 Lac-Chr6:43414622 6.90E-24 dispersed
Lac6g0544 Lac-Chr6:4523124 Lac6g0638 Lac-Chr6:5414661 1.00E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0544 K01115 - csv:101213442 978.008