Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0559 ATGAGGAGAAGCAAAAATGGAGGATTTGGGGTGCTGATGATCGTCGTCTTCTTTAGCATACTACCGTCGCCGGTGGCGGCGGAAACGGCGGCAGTGAAAGTGGGTGTGGTTTTGGATTCAAATGCTTTTGGTAAGATGGGTTTGAGTTGTATTTCGATGGCTCTCTCTGATTTTTATGATTCTCAAAGTCATTACAAAACCAGAGTGGTTCTCAACACCACTGATTCTAATGGGACGGTTGTTGGTGCAGCTGCTGCAGCTCTAGATTTGATAAAGAAAGGGGAAGTGCAAGCCATTCTAGGCCCAACAGACTCCATGCAAGCCAACTTCATGATCGAGATCGGAGATAAAGCACACGTTCCCATCATCTCATTTTCAGCCACACGACCTTCCCTCACATCTCACCGCAGCTCTTTCTTCTTTCGAGTCGCCCAAAACGATTCCTCTCAGGTGAAAGCCATTGCAGCCATCATCAAGACCTTCAAATGGCGACGTGTCGTCCCCATCTATGCCGACAACGAGTTCGGCGACGGCATCATCCCTTACCTCGTCGATGCTCTGCAAGAAGTTAACGCTCAAGTGCCTTACCAGAGCATCATCTCCAAAACTGCCACCAACGACCAGATCTCCAGTGAGCTCTACAAGTTGATGACAATGCAGACAAGAGTGTTCGTGGTGCACACGTTGCCCAGCCTGGCGTCTCGACTCTTCACCAAGGCCAAAGAGATTGGAATGATGAAGCCAGGCTACGTTTGGATAACCACCAATGCTATAACGAACCTATTTGATTTAATTGAACCTTCAACTTTGGAGTCGATGGAAGGTGTTGTAGGGATAAAAACTTGCGTCCCGAGATCCATGAGACTCGACTCCTTTAAACTTGAATGGCGTAAGAGATTTCGAAGGTATTTTCCAGCCGTGGAAGACGACGTTCCTAAACTCAATGTGTTTGGGTTATGGGCTTACGATGCCGCTTGGGCGCTGGCCATTGCAGTGGGCCGGCACCGATAA 1011 48.57 MRRSKNGGFGVLMIVVFFSILPSPVAAETAAVKVGVVLDSNAFGKMGLSCISMALSDFYDSQSHYKTRVVLNTTDSNGTVVGAAAAALDLIKKGEVQAILGPTDSMQANFMIEIGDKAHVPIISFSATRPSLTSHRSSFFFRVAQNDSSQVKAIAAIIKTFKWRRVVPIYADNEFGDGIIPYLVDALQEVNAQVPYQSIISKTATNDQISSELYKLMTMQTRVFVVHTLPSLASRLFTKAKEIGMMKPGYVWITTNAITNLFDLIEPSTLESMEGVVGIKTCVPRSMRLDSFKLEWRKRFRRYFPAVEDDVPKLNVFGLWAYDAAWALAIAVGRHR 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4671811 4674418 + Lag0004528.1 Lac6g0559 610328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0559 336 SUPERFAMILY Periplasmic binding protein-like I 24 333 IPR028082 -
Lac6g0559 336 Gene3D - 148 312 - -
Lac6g0559 336 FunFam Glutamate receptor 152 309 - -
Lac6g0559 336 CDD PBP1_GABAb_receptor_plant 33 334 IPR044440 -
Lac6g0559 336 PANTHER OS06G0188250 PROTEIN 12 333 IPR015683 -
Lac6g0559 336 Pfam Receptor family ligand binding region 50 333 IPR001828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0559 Lac-Chr6:4671811 Lac6g0568 Lac-Chr6:4734738 1.50E-138 dispersed
Lac6g0556 Lac-Chr6:4642154 Lac6g0559 Lac-Chr6:4671811 1.00E-67 proximal
Lac6g0559 Lac-Chr6:4671811 Lac6g0561 Lac-Chr6:4683193 2.60E-109 proximal
Lac6g0559 Lac-Chr6:4671811 Lac6g0562 Lac-Chr6:4688307 8.70E-17 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0559 K05387 - csv:101204040 453.366