Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0560 ATGTGGGATCCTCAACACTCGTCAAACTATTTATACAACCTTGGCATCAATCAAAACGGTCCGAAGCTGCGAGATGCATATTCAAATGTCACATTCAAGGGCTTGGCTGGGGAGTTTCAGCTCATGAATGGGCAGCTACAGTCGTCTATTTTCGAGATAGTGAATGTGCTTGGGAATGGTCGAAGAAAGGTTGGATTTTGGTTGCCAGAAACTGGGCTGACGAAGAAACTGCGGGACTCAGGAGCAAAAGGGCTAAAACCGATAACCTGGCCTGGAGATTTGACTTCTACACCAAAAGGGTGGGAGATTCCGACGAACGTGAAGAAGTTGAGAGTTGGGGTTCCAGTGAAGGATGGATTTTATGAGTTTGTGAGAGTGATTCCTGACCCTAAAACAAATGCAACACAAGTGACTGGATATTGCATAGATGTGTTTCAGGCTGTGATCGAAGCGCTTCCTTATGCAGTTGGTTATGAGTTCATTCCCTTTACCAAACCCAATGGAGAACCAGGTGGCTCCTACGATGAGTTGACTTGGCAACTCCCTGTTGGAAGGTTTGATGCTGTGGTGGGTGACATAACAATACGAGCGAACAGATGTTTGTATATGGACTACACACTACCATTCACCGAATCTGGCGTTTCGTTGGTTGTGCCAATGAAGAGCAAGAGCGCCAGCGCATGGGTTTTCTTAAAGCCACTTACTTGGAGTCTGTGGCTGCTCACAGCCGTCTTTTTCATCTTCATGGCACTTGTTGTTTGGATCTTTGAACACAGAGTCAATCAAGACTTTCGTGGACATCCTTTCGATCAGATCTGTGTCAGTCTCTGGTACTCTTTGTCAACTATGGTTTTCTCCCATCGTGAAATTACGCTCAACAACTGGACAAGACTTGTGGTAATAATATGGCTATTTGTGGTTCTGATCATTACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTGAAGAGCTGAAACCAACTATAACTGACATCGATCAGCTGCGTGCAAATGGAGAGAACATCGGGTATCCAGAAGGTTCTTTCGTGCACGAGATTCTCAATAATTTGAATTTCGATGATTCTCATCTCAAAACTTTCCGGTCTTTAGAAGAAATGCATGAACTTTTCTCGAGAGGAAGCAAGGATGGTGGAATTTCTGCTGCCATGGATGAAACCCCGTACATTAAGCTGTTTCTCTCTAAGTACTGCCCGAATTATACCACCACGGAAGCCACCTACAAAGCCAATGGCTTCGGCTTTGGTTTCCCAAAGGGTTCGCCGTTGGTGCCTGATATGTCCAGAGCGATATTGAAGGTGACAGAAGGCGATAGAATGAGAGAGATCGAAAACGCATGGTTTCGGAAGGTCAGAGACTGTTCGGATTCAGAAACCACCAAGTTGCCTTCGACACAGACAAGACTGAGCGTGGACAGCTTCTGGGTACTTTTTTTAATCACCGGCGTTGTTTCCCTCTTTTCTTGTGCTGTTTACATGGGAAAATTTCTGTACAATGAACGGCGGCTGTGGCGAGACGAAAGTGCTCCAATCTGGGGAAGAATTTGGGATTTGGTTGGGAAGTTCAAGCAGAGAGATGCGAGAGCTCACCCGCTGAGGAGAAGGTTGTTCATAAATGGTGTTCGAGTTCAACCAGATCAAGCTGTAGTTGTTGGAGATCACCATCGCTCTGGAGCAGATTGA 1707 45.69 MWDPQHSSNYLYNLGINQNGPKLRDAYSNVTFKGLAGEFQLMNGQLQSSIFEIVNVLGNGRRKVGFWLPETGLTKKLRDSGAKGLKPITWPGDLTSTPKGWEIPTNVKKLRVGVPVKDGFYEFVRVIPDPKTNATQVTGYCIDVFQAVIEALPYAVGYEFIPFTKPNGEPGGSYDELTWQLPVGRFDAVVGDITIRANRCLYMDYTLPFTESGVSLVVPMKSKSASAWVFLKPLTWSLWLLTAVFFIFMALVVWIFEHRVNQDFRGHPFDQICVSLWYSLSTMVFSHREITLNNWTRLVVIIWLFVVLIITQSYTASLASLLTVEELKPTITDIDQLRANGENIGYPEGSFVHEILNNLNFDDSHLKTFRSLEEMHELFSRGSKDGGISAAMDETPYIKLFLSKYCPNYTTTEATYKANGFGFGFPKGSPLVPDMSRAILKVTEGDRMREIENAWFRKVRDCSDSETTKLPSTQTRLSVDSFWVLFLITGVVSLFSCAVYMGKFLYNERRLWRDESAPIWGRIWDLVGKFKQRDARAHPLRRRLFINGVRVQPDQAVVVGDHHRSGAD 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4674641 4677647 + Lag0004529.1 Lac6g0560 610329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0560 568 Gene3D - 407 464 - -
Lac6g0560 568 Gene3D - 109 227 - -
Lac6g0560 568 Pfam Ligand-gated ion channel 458 491 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac6g0560 568 FunFam Glutamate receptor 2.7 364 464 - -
Lac6g0560 568 CDD GluR_Plant 108 456 - -
Lac6g0560 568 SUPERFAMILY Periplasmic binding protein-like II 88 457 - -
Lac6g0560 568 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 530 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lac6g0560 568 Gene3D - 228 359 - -
Lac6g0560 568 Gene3D - 15 108 - -
Lac6g0560 568 SUPERFAMILY Periplasmic binding protein-like I 17 92 IPR028082 -
Lac6g0560 568 FunFam Glutamate receptor 227 357 - -
Lac6g0560 568 SMART GluR_14 109 458 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac6g0560 568 Pfam Bacterial extracellular solute-binding proteins, family 3 134 234 IPR001638 -
Lac6g0560 568 FunFam Glutamate receptor 109 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0560 Lac-Chr6:4674641 Lac6g0568 Lac-Chr6:4734738 7.10E-237 dispersed
Lac6g0560 Lac-Chr6:4674641 Lac6g0561 Lac-Chr6:4683193 7.20E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0560 K05387 - csv:101203794 746.117