Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0561 ATGAAGAAAGTTGAAGTGCAAGCCATTCTAGGCCCAACAAGTTCCATGCAAGCCAACTTCATGATCGACATTGGCGACGAAGCACACGTTCCCATCATCTCATTTTCAGCCACAAGACCTTCCCTCACATCCCATCGTAGCCCTTTCTTCTTCCGAGTGGCCCAAAACGATTCCTCTCAAGTGAAAGCCATTGCAGCCATCGTAAAAACCTTCCCATGGCAACAGGTCGTTCCCATCTACAGCGATAATGACTTCGGCGACGGCATCATCCCTTACCTCATCGATGCTCTGCAAGAAGTCGATGCGCACGTGCCCTACCAGAGCATCATCTCCCCCACCGCCACCGACGACCAAATTAGTAGTGAGCTTCACAAGCTGATGACGATGCAGACCAGAGTGTTTGTGGTGCACATGTTACGCCGCCATGCTTCCCGAATCTTCACGAAGGCTAAAGAGATTGGAATGATGAAGCCAGGCTACGTTTGGATAGTCACGGATGCTATAGCAAACGAGTTGGATTTGATTGACCCTTCAACTTTGGAGTCCATGCAAGGAGTTGTTGGGATAAAAACTCACGTCCCCACAACCAAGAGGCTCGAATTCTTTCAACTTAACTGGCGGAAGAGATTTCAAAGGTACTATCCTACCTTAAAAGAAATTCCAGAGCTGAACGTGTTTGGGTTATGGGCTTACGACGCCGCTTGGGCGCTGGCCATGGCCGTGGAAAAGGCTGGAATCAACAACCTTCGATACAGCCCGACCAATAATGTTACTACTACGTCGTCAAACTATCTATACAATCTTGGCGTGAATCAAAATGGTCTGAAGCTACAAGATGCCTTCTCAAATGTCACGTTCAGGGGCTTGGCTGGTGAGTTCAGTCTAATCAATGGACAATTACAGTCTTCTGTTTTCGAGATAGTGAATGTGATTGGCAACGGAGAAAGAAACGTTGGGTTTTGGTCACCAGAAAATGGGCTAACGACGAAGTTGAAGAACTCTACAAGTGCAAATGGGTTGAGATCAATCATCTGGCCGGGAAATCCGAGCTCTGCCCCAAAAGGGTGGGAGATTCCGACGAATGGGAAGAGGTTGAGAGTTGGGGTTCCAGTGAAGAATGGATTTCATGAATTTGTGAGTGTGAATGGAACGAATGTGACTGGATATTGCATAGAAATATTCAAGGCTGTGCTCGAAAAATTGCCTTATGTTGGTGATCCTGAGTTCATTCATTTCGACACAACTGCAGCCTCACTTGGCACCTACGATGAATTAGTTCATCGGCTCTTCCTTGGGACGTATGACGCCGTGGTGGGTGACATAACAATCCGGGCGAACAGGTCTTTAATCATAGACTACACATTGCCATTCATAGAATCGGGAGTGTCGATGGTTGTTCCGGTGAAGAGTAGCAAGAAAGATAACGCATGGGTGTTCTTGAAGCCTCTTACTGGGAGTCTGTGGGTAATCACAGCTGTCTTCTTCCTCCTCATCGCACTTGTTGTTTGGATTCTAGAGCATCGAGTTAACGAAGACTTTCGTGGACATCCTTTGGATCAGATATGCACCAGTCTTTGGTACTCTTTCTCCACCATGGTTTTTGCCCATAGGGAGATTGTGTTCAACAATTGGACAAGACTTGTGGTGATAATATGGCTATTCGTAGTTCTCATCATCACACAAAGTTACACTGCAAGTTTGGCCTCACTTTTGACGGTTCAAGAGCTGAAACCTACTGTAACTGATATCAATCAGCTGCTTAAAAATGGAGAGAACATTGGTTATCAGGGTGGTTCATTCATTCGTGAGATTCTCAAGTCGTTGAAATTCGACGATTCCAAACTCATAATTTACGAGTCCGCAGAAGAAATGCACGAACTTTTCACCAGAGGGAGCAAGAATGGCGGAATTTCTGCTGCAATGGATGAAACCCCTTACATTAAACTATTTCTCGCTCAGTACTGCTCAAAATACACCACCACCGAACCCACCTATAAAGCCGATGGCTTTGCTTTTAGCTTCAAGATCCTTGCTAAGAAGATGGCTAGCAACGGCATGGTCCCATTCCAAGTTCCAATGCTCAACAAGAGCAACTATGACAATTGGAGCATCAAGATGAAGGCTCTCCTTGGCTCGCAAGACGTATGGGAGATAGTGGAGAAATGA 2166 46.08 MKKVEVQAILGPTSSMQANFMIDIGDEAHVPIISFSATRPSLTSHRSPFFFRVAQNDSSQVKAIAAIVKTFPWQQVVPIYSDNDFGDGIIPYLIDALQEVDAHVPYQSIISPTATDDQISSELHKLMTMQTRVFVVHMLRRHASRIFTKAKEIGMMKPGYVWIVTDAIANELDLIDPSTLESMQGVVGIKTHVPTTKRLEFFQLNWRKRFQRYYPTLKEIPELNVFGLWAYDAAWALAMAVEKAGINNLRYSPTNNVTTTSSNYLYNLGVNQNGLKLQDAFSNVTFRGLAGEFSLINGQLQSSVFEIVNVIGNGERNVGFWSPENGLTTKLKNSTSANGLRSIIWPGNPSSAPKGWEIPTNGKRLRVGVPVKNGFHEFVSVNGTNVTGYCIEIFKAVLEKLPYVGDPEFIHFDTTAASLGTYDELVHRLFLGTYDAVVGDITIRANRSLIIDYTLPFIESGVSMVVPVKSSKKDNAWVFLKPLTGSLWVITAVFFLLIALVVWILEHRVNEDFRGHPLDQICTSLWYSFSTMVFAHREIVFNNWTRLVVIIWLFVVLIITQSYTASLASLLTVQELKPTVTDINQLLKNGENIGYQGGSFIREILKSLKFDDSKLIIYESAEEMHELFTRGSKNGGISAAMDETPYIKLFLAQYCSKYTTTEPTYKADGFAFSFKILAKKMASNGMVPFQVPMLNKSNYDNWSIKMKALLGSQDVWEIVEK 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4683193 4686392 - Lag0004530.1 Lac6g0561 610330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0561 721 FunFam Glutamate receptor 62 220 - -
Lac6g0561 721 Gene3D - 58 225 - -
Lac6g0561 721 Pfam Receptor family ligand binding region 2 312 IPR001828 -
Lac6g0561 721 SUPERFAMILY Periplasmic binding protein-like I 5 347 IPR028082 -
Lac6g0561 721 SUPERFAMILY Periplasmic binding protein-like II 341 675 - -
Lac6g0561 721 FunFam Glutamate receptor 270 363 - -
Lac6g0561 721 SMART GluR_14 364 680 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac6g0561 721 Gene3D - 255 364 - -
Lac6g0561 721 CDD GluR_Plant 363 674 - -
Lac6g0561 721 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 675 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lac6g0561 721 Gene3D - 476 606 - -
Lac6g0561 721 FunFam Glutamate receptor 476 606 - -
Lac6g0561 721 FunFam Glutamate receptor 622 670 - -
Lac6g0561 721 FunFam Glutamate receptor 360 475 - -
Lac6g0561 721 Pfam Domain of unknown function (DUF4219) 694 720 IPR025314 -
Lac6g0561 721 CDD PBP1_GABAb_receptor_plant 1 331 IPR044440 -
Lac6g0561 721 Pfam Ligand-gated ion channel 486 671 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac6g0561 721 Gene3D - 365 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0561 Lac-Chr6:4683193 Lac6g0569 Lac-Chr6:4747020 6.50E-304 dispersed
Lac6g0559 Lac-Chr6:4671811 Lac6g0561 Lac-Chr6:4683193 2.60E-109 proximal
Lac6g0560 Lac-Chr6:4674641 Lac6g0561 Lac-Chr6:4683193 7.20E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0561 K05387 - csv:101203305 993.416