Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0573 ATGGCTTCGAAGCTTTGTGACTCGTGTAAGTCGGCGACGGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTCTGCGTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAGCTCGCTTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTCTGCGAGCAAGCTCCTGCTCATGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGCCTCTCTTGCGACCACGATATCCACTCTGTCAATCCTCTCGCTCGCCGTCACGAGCGAGTTCCAGTCACGCCCTTCTACGACTCCTCCAACACATCCAACTCACTCGCAGTTAAGCCTGCCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCCGATGTCGACGCCGACGCCGCCGATGTCAGCAGAGAGGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAGCCGAAAGTCCAGATCTGAACTCGGGGAAGTTCGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTGGATCCGAAATTAGAAGCGCAAGAGCAGAACAGCTCCGGCGCCGATGGAGTCGTTCCGGTTCAGAGTAAAGGCGTCCATCTCTCGTCGGTGAACGATCGCTGCTTCGGCATCGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCGTCGATCGAGGTCGGAGTTGTCCCGGACGGCAACGCGATGACGGAGATATCGAATCCGTACACGAAGCCGTCTACGGAATCGAATAATGTTCAACCACCGCTGCAAATCTCGCCGGCGGATCGAGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAGGCGTACGCCGAGACGAGACCGAGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGAGGTCGACCGAGTGAGTGGATACGGCGTCGTTCCGTCCTTCTAA 1020 56.27 MASKLCDSCKSATATLFCRADSAFLCVGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLSCDHDIHSVNPLARRHERVPVTPFYDSSNTSNSLAVKPAAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAAESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVHLSSVNDRCFGIDFPGAKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTEISNPYTKPSTESNNVQPPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4791925 4793042 + Lag0004542.1 Lac6g0573 610342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0573 339 Pfam CCT motif 278 320 IPR010402 GO:0005515(InterPro)
Lac6g0573 339 MobiDBLite consensus disorder prediction 142 161 - -
Lac6g0573 339 CDD Bbox1_BBX-like 48 91 IPR049808 -
Lac6g0573 339 CDD Bbox1_BBX-like 5 48 IPR049808 -
Lac6g0573 339 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 322 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lac6g0573 339 ProSiteProfiles CCT domain profile. 278 320 IPR010402 GO:0005515(InterPro)
Lac6g0573 339 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0573 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0282 Lac-Chr3:2014793 Lac6g0573 Lac-Chr6:4791925 2.70E-67 dispersed
Lac6g0573 Lac-Chr6:4791925 Lac6g2346 Lac-Chr6:41107724 3.70E-31 dispersed
Lac6g0573 Lac-Chr6:4791925 Lac9g1940 Lac-Chr9:39196669 6.70E-09 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0573 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.2e-83 307.8
Lac3g0282 . 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 51.1 8.2e-66 248.4
Lac9g1940 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 50.6 3.1e-92 336.3
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.6 2.0e-86 317.0
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac4g1427 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.1 3.7e-52 203.0
Lac9g1735 . 15 216 C2C2-CO-like Transcription Factor Family AT1G75540 51.6 3.0e-46 183.3
Lac5g2128 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.6 6.4e-56 214.5
Lac1g2983 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 9.0e-50 194.1
Lac9g1749 . 1 197 C2C2-CO-like Transcription Factor Family AT2G21320 51.3 6.4e-48 188.0
Lac5g2128 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 9.5e-58 220.7
Lac9g1749 . 1 196 C2C2-CO-like Transcription Factor Family AT4G38960 55.1 1.3e-51 200.3
Lac1g2983 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.8 6.2e-49 191.4
Lac4g1427 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.1 5.8e-55 211.8
Lac6g0470 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.7 2.0e-47 186.8
Lac9g1735 . 15 209 C2C2-CO-like Transcription Factor Family AT4G39070 54.2 1.8e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23999 PF00643 zf-B_box 3.50E-06 No_clan Lac TF