Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0573 ATGGCTTCGAAGCTTTGTGACTCGTGTAAGTCGGCGACGGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTCTGCGTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAGCTCGCTTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTCTGCGAGCAAGCTCCTGCTCATGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGCCTCTCTTGCGACCACGATATCCACTCTGTCAATCCTCTCGCTCGCCGTCACGAGCGAGTTCCAGTCACGCCCTTCTACGACTCCTCCAACACATCCAACTCACTCGCAGTTAAGCCTGCCGCTGCAATCAACTTCCTCGACGACCGTTACTTCTCCGATGTCGACGCCGACGCCGCCGATGTCAGCAGAGAGGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAGCCGAAAGTCCAGATCTGAACTCGGGGAAGTTCGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTGGATCCGAAATTAGAAGCGCAAGAGCAGAACAGCTCCGGCGCCGATGGAGTCGTTCCGGTTCAGAGTAAAGGCGTCCATCTCTCGTCGGTGAACGATCGCTGCTTCGGCATCGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCGTCGATCGAGGTCGGAGTTGTCCCGGACGGCAACGCGATGACGGAGATATCGAATCCGTACACGAAGCCGTCTACGGAATCGAATAATGTTCAACCACCGCTGCAAATCTCGCCGGCGGATCGAGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATCCGATACGCATCTCGTAAGGCGTACGCCGAGACGAGACCGAGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGAGGTCGACCGAGTGAGTGGATACGGCGTCGTTCCGTCCTTCTAA 1020 56.27 MASKLCDSCKSATATLFCRADSAFLCVGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLSCDHDIHSVNPLARRHERVPVTPFYDSSNTSNSLAVKPAAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAAESPDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVHLSSVNDRCFGIDFPGAKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTEISNPYTKPSTESNNVQPPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4791925 4793042 + Lag0004542.1 Lac6g0573 610342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0573 339 Pfam CCT motif 278 320 IPR010402 GO:0005515(InterPro)
Lac6g0573 339 MobiDBLite consensus disorder prediction 142 161 - -
Lac6g0573 339 CDD Bbox1_BBX-like 48 91 IPR049808 -
Lac6g0573 339 CDD Bbox1_BBX-like 5 48 IPR049808 -
Lac6g0573 339 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 322 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lac6g0573 339 ProSiteProfiles CCT domain profile. 278 320 IPR010402 GO:0005515(InterPro)
Lac6g0573 339 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Lac6g0573 339 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0282 Lac-Chr3:2014793 Lac6g0573 Lac-Chr6:4791925 2.70E-67 dispersed
Lac6g0573 Lac-Chr6:4791925 Lac6g2346 Lac-Chr6:41107724 3.70E-31 dispersed
Lac6g0573 Lac-Chr6:4791925 Lac9g1940 Lac-Chr9:39196669 6.70E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23999 PF00643 zf-B_box 3.50E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0573 - - - 0.0