Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0592 ATGTCCGACGAAGAGCATCAGTTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAAGCCGGAACCATCCGTAAGAATGTTACATTGTCATCAAGGCGTCCTGCAAGGTCTCAAGTTGTGAATGTATATGCTAGAAAGAGTAAAAAAGTTGAGGTTTCTACATCCAAGACTGGAAAGCACGGGCATGCTAAGTGTCACTTTGTGGCAATTGATATATTCACTGCTAAAAAGCTTGAAGATATTGTTCCATCATCCCACAACTGTGATGTTCCTGAGGTTACTCGTACTGATTATCAGCTTATCGACATCTCCGAAGATGGATTTGTGAGCCTCTTGACTGACAATGGAAGCACAAAGGATGATTTGAGGGTTCCTACTGATGAAAGTTTACTTGCTCAGATTAAAGATGGATTTGCAGAAGGAAAGGACCTTGTCGTGAGTGTCATGTATGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAATTGA 516 44.38 MSDEEHQFESKADAGASKTFPQQAGTIRKNVTLSSRRPARSQVVNVYARKSKKVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRVPTDESLLAQIKDGFAEGKDLVVSVMYAMGEEQICGLKDIGPKN 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4950521 4952461 - Lag0004561.1 Lac6g0592 610361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0592 171 Gene3D - 1 96 IPR014722 -
Lac6g0592 171 FunFam Eukaryotic translation initiation factor 5A 1 96 - -
Lac6g0592 171 FunFam Eukaryotic translation initiation factor 5A 97 169 - -
Lac6g0592 171 CDD S1_eIF5A 97 167 - -
Lac6g0592 171 NCBIfam translation initiation factor IF-5A 41 163 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lac6g0592 171 Gene3D - 97 170 IPR012340 -
Lac6g0592 171 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 168 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lac6g0592 171 PIRSF Transl_init_eIF5A 1 168 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lac6g0592 171 Pfam Translation initiation factor 5A-like, N-terminal 17 90 IPR048670 -
Lac6g0592 171 SUPERFAMILY Nucleic acid-binding proteins 97 167 IPR012340 -
Lac6g0592 171 SUPERFAMILY Translation proteins SH3-like domain 44 104 IPR008991 -
Lac6g0592 171 MobiDBLite consensus disorder prediction 1 37 - -
Lac6g0592 171 MobiDBLite consensus disorder prediction 16 37 - -
Lac6g0592 171 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 61 68 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lac6g0592 171 SMART eIF_5a_2 96 165 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lac6g0592 171 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 97 165 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0213 Lac-Chr3:1527886 Lac6g0592 Lac-Chr6:4950521 1.20E-69 dispersed
Lac2g0544 Lac-Chr2:4047787 Lac6g0592 Lac-Chr6:4950521 3.50E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0592 K03263 - csv:101211156 278.87