Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0607 | ATGGCAAGACCTCAACAGCGTTATCGAGGCGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTGGGCACTTTCGAAACGGCGGAGGATGCTGCAAGAGCCTACGACGAAGCCGCTCGCCTAATGTGTGGCCCTCGAGCACGAACCAATTTCCCTTTCAACGCCAACGACTCCAATTCCTCTTCTTCTAAACTTCTCTCTGCCAATTTGACCGCCAAGCTCCACCGTTGCTACATGGCGTCTCTCCATTTGACCAACACATCGCCGCAGAAACCCGCCGCGCCCGGGAATAAGACCCTGACGGCGGAGAAGAAAAGGGCGGCGGCGGCGGCGGTGGCGGAGGCGCAAACGGAGACTGCCCATCAGCCGTTTGAGGCTCTGGAAGAGGATCACATCCAACAGATGATTGATGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTGTGGTGCCGCCGTCGCAGGCCTTTTGA | 510 | 54.9 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSANLTAKLHRCYMASLHLTNTSPQKPAAPGNKTLTAEKKRAAAAAVAEAQTETAHQPFEALEEDHIQQMIDELIHYGSVELCSVVPPSQAF | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5159312 | 5159906 | - | Lag0004576.1 | Lac6g0607 | 610376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0607 | 169 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0607 | 169 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0607 | 169 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 66 | - | - | |
| Lac6g0607 | 169 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0607 | 169 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) | |
| Lac6g0607 | 169 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 122 | IPR050913 | - | |
| Lac6g0607 | 169 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0607 | 169 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0607 | 169 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac6g0607 | 169 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g0610 | Lac-Chr2:4591556 | Lac6g0607 | Lac-Chr6:5159312 | 1.30E-11 | dispersed | |
| Lac3g0807 | Lac-Chr3:6412484 | Lac6g0607 | Lac-Chr6:5159312 | 2.20E-26 | dispersed | |
| Lac6g0607 | Lac-Chr6:5159312 | Lac6g2931 | Lac-Chr6:46959924 | 1.50E-25 | dispersed | |
| Lac6g0607 | Lac-Chr6:5159312 | Lac6g0608 | Lac-Chr6:5165481 | 1.00E-50 | tandem | |
| Lac11g0615 | Lac-Chr11:6312121 | Lac6g0607 | Lac-Chr6:5159312 | 5.60E-34 | wgd | |
| Lac2g0562 | Lac-Chr2:4252667 | Lac6g0607 | Lac-Chr6:5159312 | 3.60E-48 | wgd | |
| Lac4g2752 | Lac-Chr4:46384071 | Lac6g0607 | Lac-Chr6:5159312 | 2.50E-45 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24003 | PF00847 | AP2 | 6.40E-12 | CL0081 | Lac | TF |
Pathway information