Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0607 ATGGCAAGACCTCAACAGCGTTATCGAGGCGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTGGGCACTTTCGAAACGGCGGAGGATGCTGCAAGAGCCTACGACGAAGCCGCTCGCCTAATGTGTGGCCCTCGAGCACGAACCAATTTCCCTTTCAACGCCAACGACTCCAATTCCTCTTCTTCTAAACTTCTCTCTGCCAATTTGACCGCCAAGCTCCACCGTTGCTACATGGCGTCTCTCCATTTGACCAACACATCGCCGCAGAAACCCGCCGCGCCCGGGAATAAGACCCTGACGGCGGAGAAGAAAAGGGCGGCGGCGGCGGCGGTGGCGGAGGCGCAAACGGAGACTGCCCATCAGCCGTTTGAGGCTCTGGAAGAGGATCACATCCAACAGATGATTGATGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTGTGGTGCCGCCGTCGCAGGCCTTTTGA 510 54.9 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSANLTAKLHRCYMASLHLTNTSPQKPAAPGNKTLTAEKKRAAAAAVAEAQTETAHQPFEALEEDHIQQMIDELIHYGSVELCSVVPPSQAF 169
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5159312 5159906 - Lag0004576.1 Lac6g0607 610376
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0607 169 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0607 169 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0607 169 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Lac6g0607 169 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0607 169 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Lac6g0607 169 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 122 IPR050913 -
Lac6g0607 169 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0607 169 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0607 169 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0607 169 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0610 Lac-Chr2:4591556 Lac6g0607 Lac-Chr6:5159312 1.30E-11 dispersed
Lac3g0807 Lac-Chr3:6412484 Lac6g0607 Lac-Chr6:5159312 2.20E-26 dispersed
Lac6g0607 Lac-Chr6:5159312 Lac6g2931 Lac-Chr6:46959924 1.50E-25 dispersed
Lac6g0607 Lac-Chr6:5159312 Lac6g0608 Lac-Chr6:5165481 1.00E-50 tandem
Lac11g0615 Lac-Chr11:6312121 Lac6g0607 Lac-Chr6:5159312 5.60E-34 wgd
Lac2g0562 Lac-Chr2:4252667 Lac6g0607 Lac-Chr6:5159312 3.60E-48 wgd
Lac4g2752 Lac-Chr4:46384071 Lac6g0607 Lac-Chr6:5159312 2.50E-45 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24003 PF00847 AP2 6.40E-12 CL0081 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0607 - - - 0.0