Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0608 | ATGCCCAGACCACAACAAAGATACCGCGGCGTCCGACAGCGCCACTGGGGCTCTTGGGTCTCCGAAATCCGCCATCCCTTATTGAAGACTAGAATTTGGCTAGGCACCTTCGAGACAGCGGAGGATGCTGCGCGGGCATACGACGAAGCTGCGAGGCTGATGTGCGGACCGAGGGCGCGTACGAACTTCCCTTACGACGCCTCCCTATCTCGCTCCTCCTCTTCCCGCCTTCTCTCGGCCACTTTGACCGCCAAGCTCCACCGTTGCTACATGGCGTCGCTGCAGCTGACCAAGCAATCCTCTCCCGCCATGCGTCGTGCTCAAACCGACCCAATCCGAACCGATTTCGTTATGGCTTCCAGCATTGCCCCCACCGAGCAAGTCGAAGCGGAAGCGACGGTGAAGAAAGTGAAACTGGAGAGTGAGGATTGTGGGGAGCCGTTGATGATTGAGATGCTGGATGATGATCATATACAGCAGATGATCGAGGAGCTGCTGGATTACGGCGGAATTGAGCTCCGGTTGCAGCCTCAGGCCATTTGA | 543 | 57.46 | MPRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSPAMRRAQTDPIRTDFVMASSIAPTEQVEAEATVKKVKLESEDCGEPLMIEMLDDDHIQQMIEELLDYGGIELRLQPQAI | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5165481 | 5166105 | - | Lag0004577.1 | Lac6g0608 | 610377 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0608 | 180 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0608 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0608 | 180 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 128 | IPR050913 | - | |
Lac6g0608 | 180 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) | |
Lac6g0608 | 180 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0608 | 180 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0608 | 180 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 65 | - | - | |
Lac6g0608 | 180 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0608 | 180 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g0608 | 180 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0615 | Lac-Chr11:6312121 | Lac6g0608 | Lac-Chr6:5165481 | 7.10E-37 | dispersed | |
Lac11g0681 | Lac-Chr11:7060658 | Lac6g0608 | Lac-Chr6:5165481 | 3.20E-24 | dispersed | |
Lac2g0562 | Lac-Chr2:4252667 | Lac6g0608 | Lac-Chr6:5165481 | 1.90E-49 | dispersed | |
Lac4g2752 | Lac-Chr4:46384071 | Lac6g0608 | Lac-Chr6:5165481 | 3.40E-42 | dispersed | |
Lac6g0608 | Lac-Chr6:5165481 | Lac6g2931 | Lac-Chr6:46959924 | 7.20E-26 | dispersed | |
Lac6g0607 | Lac-Chr6:5159312 | Lac6g0608 | Lac-Chr6:5165481 | 1.00E-50 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24004 | PF00847 | AP2 | 7.20E-12 | CL0081 | Lac | TF |
Pathway information
