Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0608 ATGCCCAGACCACAACAAAGATACCGCGGCGTCCGACAGCGCCACTGGGGCTCTTGGGTCTCCGAAATCCGCCATCCCTTATTGAAGACTAGAATTTGGCTAGGCACCTTCGAGACAGCGGAGGATGCTGCGCGGGCATACGACGAAGCTGCGAGGCTGATGTGCGGACCGAGGGCGCGTACGAACTTCCCTTACGACGCCTCCCTATCTCGCTCCTCCTCTTCCCGCCTTCTCTCGGCCACTTTGACCGCCAAGCTCCACCGTTGCTACATGGCGTCGCTGCAGCTGACCAAGCAATCCTCTCCCGCCATGCGTCGTGCTCAAACCGACCCAATCCGAACCGATTTCGTTATGGCTTCCAGCATTGCCCCCACCGAGCAAGTCGAAGCGGAAGCGACGGTGAAGAAAGTGAAACTGGAGAGTGAGGATTGTGGGGAGCCGTTGATGATTGAGATGCTGGATGATGATCATATACAGCAGATGATCGAGGAGCTGCTGGATTACGGCGGAATTGAGCTCCGGTTGCAGCCTCAGGCCATTTGA 543 57.46 MPRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSPAMRRAQTDPIRTDFVMASSIAPTEQVEAEATVKKVKLESEDCGEPLMIEMLDDDHIQQMIEELLDYGGIELRLQPQAI 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5165481 5166105 - Lag0004577.1 Lac6g0608 610377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0608 180 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0608 180 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0608 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 128 IPR050913 -
Lac6g0608 180 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Lac6g0608 180 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0608 180 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0608 180 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Lac6g0608 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0608 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0608 180 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0615 Lac-Chr11:6312121 Lac6g0608 Lac-Chr6:5165481 7.10E-37 dispersed
Lac11g0681 Lac-Chr11:7060658 Lac6g0608 Lac-Chr6:5165481 3.20E-24 dispersed
Lac2g0562 Lac-Chr2:4252667 Lac6g0608 Lac-Chr6:5165481 1.90E-49 dispersed
Lac4g2752 Lac-Chr4:46384071 Lac6g0608 Lac-Chr6:5165481 3.40E-42 dispersed
Lac6g0608 Lac-Chr6:5165481 Lac6g2931 Lac-Chr6:46959924 7.20E-26 dispersed
Lac6g0607 Lac-Chr6:5159312 Lac6g0608 Lac-Chr6:5165481 1.00E-50 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24004 PF00847 AP2 7.20E-12 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0608 - - - 0.0