Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0611 ATGAAGCTTCTTCTTCTTCATCTCGTTTCTGTCGCCTTTCTTTTCTCTTCTTTTCTTCTTCGATTTTGCTCTGTTTTCGTGGCTGCCTCTTCTTTGCCTTCTGCTCCCTTGCCTTCTCCCGTTTCTCCATTTTTGGATTCAATGGCTGCTTCCTCTCCAGGGATTCAGATGGGAATGGAGAGCCTTAGAAGCGACGCCCACAAGAAAATGCTAATTGCCCTCATCGTTTGTGCTTCAATCGGCGCAGTCTTAGTGGCTTCACTGTGTTTGTGGATTTATTGCAGAAGAAACTCGCCAAACTTCCATAAACGAAACGTTCGGAGCTCAGATGCCGAGAAGGGTCTCGTTGGGTTGGCTCCAATTTTGCGTAAATTCAGCTCAAACAAAATGGTGGGTAACAATAAAGTATCTGTTCCACTCATTGATTACGAGGTACTCGAAAAGGCCACCAACATTTTCCAGGAAAGTAACATTCTGGGCGAGGGTGGATTTGGACGGGTTTACAAGGCTCGATTGGAAGATAACTTACACGTTGCTGTGAAGAAACTAGAATGTAGCGATAAGGAGTCAGAGAAAGAATTCGAGAACGAAGTCGATCTATTGAGCAAAATTCAGCATTCAAACATCATCCGGCTACTGGGTTACACCATTCATGGGGAATCAAGGCTTCTTGTGTACGAGTTAATGGAAAACGGATCACTGGAAACACTGTTACATGGGCCTTCACATGGAGAGGCATTAACATGGCACATGCGCATGAAGATTGCTCTGGATTCAGCTAGAGGATTAGAATATCTGCATGAGCACTGCAAGCCTGCAGTCATACATAGAGATCTGAAATCGTCCAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTTTCCGATTTTGGCCTGTCTGTAATTGTTGGAGCACAAAACAAGAACGATATAAAGCTTTCTGGGACGATGGGTTATGTTGCTCCAGAATATCTTTTAGATGGTAAATTGACTGATAAGAGTGATGTCTATGCCTTTGGTGTTGTGCTTTTGGAGCTTCTTTTAGGAAGAAGGCCTGTTGAAAAACTGGCACCATCTCAATGTCAATCCATTGTCACATGGGCTATGCCTCAGCTCACTGATAGATCAAAGTTGCCTGATATCGTTGACCCGGTGATCAGAAACACAATGGATCCGAAACACTTATTTCAGGTTGCTGCTGTCGCCGTGCTATGCGTGCAACCCGAACCGAGCTATCGCCCCCTAATAACAGATGTTTTGCACTCTCTTATTCCTCTTGTTCCCGTTGAGCTTGGAGGGACGCTCAGATCACCAACACAACAAGTTCCTGTGGCTCCAGCTTAG 1344 44.64 MKLLLLHLVSVAFLFSSFLLRFCSVFVAASSLPSAPLPSPVSPFLDSMAASSPGIQMGMESLRSDAHKKMLIALIVCASIGAVLVASLCLWIYCRRNSPNFHKRNVRSSDAEKGLVGLAPILRKFSSNKMVGNNKVSVPLIDYEVLEKATNIFQESNILGEGGFGRVYKARLEDNLHVAVKKLECSDKESEKEFENEVDLLSKIQHSNIIRLLGYTIHGESRLLVYELMENGSLETLLHGPSHGEALTWHMRMKIALDSARGLEYLHEHCKPAVIHRDLKSSNILLDANFNAKLSDFGLSVIVGAQNKNDIKLSGTMGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRRPVEKLAPSQCQSIVTWAMPQLTDRSKLPDIVDPVIRNTMDPKHLFQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGTLRSPTQQVPVAPA 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5187206 5190356 - Lag0004580.1 Lac6g0611 610380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0611 447 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524(InterPro)
Lac6g0611 447 FunFam Protein kinase superfamily protein 119 228 - -
Lac6g0611 447 Gene3D Phosphorylase Kinase; domain 1 119 228 - -
Lac6g0611 447 Gene3D Transferase(Phosphotransferase) domain 1 229 428 - -
Lac6g0611 447 SMART serkin_6 153 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0611 447 PANTHER OS01G0750732 PROTEIN 50 427 IPR050885 -
Lac6g0611 447 Pfam Protein tyrosine and serine/threonine kinase 156 390 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g0611 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g0611 447 SUPERFAMILY Protein kinase-like (PK-like) 132 423 IPR011009 -
Lac6g0611 447 ProSiteProfiles Protein kinase domain profile. 153 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g0611 447 FunFam probable receptor-like protein kinase At1g80640 229 428 - -
Lac6g0611 447 CDD STKc_IRAK 159 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0611 Lac-Chr6:5187206 Lac5g1402 Lac-Chr5:28145867 1.20E-69 dispersed
Lac4g2753 Lac-Chr4:46390041 Lac6g0611 Lac-Chr6:5187206 2.30E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86255 PF00069 Pkinase 1.00E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0611 - - - 0.0