Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0614 | ATGACTTTTCGAAACCAACTCTCTCGGGACCTTCCTCTCCATTACACGAACCAGCCCCAACAGCAGCAGCCGGAACGGCCACTTTCTGATAACACTCTGCGCTCTATTTTATCTGATCAGCTGACCGACCACTCTCCGGCTGAGGATGGTTCTAAATCCGAGCATCCGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGTTGAGGATAACGTCAACACCGATTTCCTTAATCTTCACATGACTGCCTCTAATTCCGTCGTCTCTCACCCGTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCACAGTGATGTTATCGATGAAGTCGCCGATGCTGCAGACGCTATGATTGGCGCCACCGCCTCTTTGTCGCGCGAATCGGATGATTTAAAGAACAACAGCAGCGGCGGCGGAGGGGACGATGTGAACAACAGCGACGATGTGGGGGTTGAGAGCGATGGTAATGAAGGTGCTCATGGTGAAGAGGCGGCAGTCAATTGGCAGAATGCGCGGTCTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTCTCTGCGCACGTCGCCTGCCTTCGGATCGCAACGCCGGTGGACCAGTTGCCGAGGATAGATTCTCAACTTGCTCAGTCTCAGAATGTGACGGTGAAATACTCGTCACTGAGCCACGGTTCTCAGCCCACAGTCGGCAATGGAAAAGAGCTTGATCAGTTTATGACGCATTATGTTCTGTTACTTTGTTCTTTTAAAGAACAGCTCCAGCAACATGTCCGAGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGTTTAACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGACGAAGACCAGATAGATAGCGATGTTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCAATGGGATTTGGTCCCCTTATCCCAACGGAGAGTGAGAGATCCTTGATGGAGAGGGTGAGGCACGAATTAAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTACGAAAAAGGAGAGCAGGCAAACTTCCTGGTGACACTACATCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTGCAGCTAAAGCAGATAAATAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAACCTTGAAGACCAAACGCAAAAGGCAACGACCATCCATAGCTCGAGAAAAACAAATTCGAAGCATTGAAATACAGGCGCCTGGTGCGGAGGAAACTGGCTATTGTCTATTCTGGGGAGAAGCTGCAAGGTTGAGGTGA | 1482 | 48.52 | MTFRNQLSRDLPLHYTNQPQQQQPERPLSDNTLRSILSDQLTDHSPAEDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTVEDNVNTDFLNLHMTASNSVVSHPSGQWLSRPILHRNHSDVIDEVADAADAMIGATASLSRESDDLKNNSSGGGGDDVNNSDDVGVESDGNEGAHGEEAAVNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAQSQNVTVKYSSLSHGSQPTVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDVNLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRQRPSIAREKQIRSIEIQAPGAEETGYCLFWGEAARLR | 493 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5232142 | 5236763 | + | Lag0004583.1 | Lac6g0614 | 610383 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0614 | 493 | Pfam | ELK domain | 359 | 380 | IPR005539 | GO:0003677(InterPro) | |
Lac6g0614 | 493 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 380 | 441 | - | - | |
Lac6g0614 | 493 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Lac6g0614 | 493 | Pfam | KNOX1 domain | 194 | 234 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac6g0614 | 493 | Pfam | Homeobox KN domain | 399 | 438 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac6g0614 | 493 | Gene3D | - | 380 | 441 | - | - | |
Lac6g0614 | 493 | SMART | HOX_1 | 381 | 446 | IPR001356 | GO:0003677(InterPro) | |
Lac6g0614 | 493 | ProSiteProfiles | 'Homeobox' domain profile. | 379 | 442 | IPR001356 | GO:0003677(InterPro) | |
Lac6g0614 | 493 | SMART | KNOX1_2 | 191 | 235 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac6g0614 | 493 | SMART | KNOX2_2 | 247 | 302 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac6g0614 | 493 | Pfam | KNOX2 domain | 251 | 301 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac6g0614 | 493 | MobiDBLite | consensus disorder prediction | 146 | 162 | - | - | |
Lac6g0614 | 493 | SUPERFAMILY | Homeodomain-like | 381 | 445 | IPR009057 | - | |
Lac6g0614 | 493 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 190 | 441 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac6g0614 | 493 | CDD | homeodomain | 382 | 443 | IPR001356 | GO:0003677(InterPro) | |
Lac6g0614 | 493 | MobiDBLite | consensus disorder prediction | 438 | 464 | - | - | |
Lac6g0614 | 493 | ProSiteProfiles | ELK domain profile. | 359 | 379 | IPR005539 | GO:0003677(InterPro) | |
Lac6g0614 | 493 | SMART | ELK_2 | 359 | 380 | IPR005539 | GO:0003677(InterPro) | |
Lac6g0614 | 493 | MobiDBLite | consensus disorder prediction | 145 | 182 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2153 | Lac-Chr11:37576346 | Lac6g0614 | Lac-Chr6:5232142 | 1.30E-101 | dispersed | |
Lac2g0572 | Lac-Chr2:4316365 | Lac6g0614 | Lac-Chr6:5232142 | 1.70E-162 | dispersed | |
Lac6g0614 | Lac-Chr6:5232142 | Lac6g2534 | Lac-Chr6:43116099 | 6.50E-29 | dispersed | |
Lac2g0570 | Lac-Chr2:4305795 | Lac6g0614 | Lac-Chr6:5232142 | 2.00E-184 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24005 | PF03791 | KNOX2 | 1.90E-19 | No_clan | Lac | TF |
Pathway information
