Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0614 ATGACTTTTCGAAACCAACTCTCTCGGGACCTTCCTCTCCATTACACGAACCAGCCCCAACAGCAGCAGCCGGAACGGCCACTTTCTGATAACACTCTGCGCTCTATTTTATCTGATCAGCTGACCGACCACTCTCCGGCTGAGGATGGTTCTAAATCCGAGCATCCGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCACGACGACCGTTGAGGATAACGTCAACACCGATTTCCTTAATCTTCACATGACTGCCTCTAATTCCGTCGTCTCTCACCCGTCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCACAGTGATGTTATCGATGAAGTCGCCGATGCTGCAGACGCTATGATTGGCGCCACCGCCTCTTTGTCGCGCGAATCGGATGATTTAAAGAACAACAGCAGCGGCGGCGGAGGGGACGATGTGAACAACAGCGACGATGTGGGGGTTGAGAGCGATGGTAATGAAGGTGCTCATGGTGAAGAGGCGGCAGTCAATTGGCAGAATGCGCGGTCTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTCTCTGCGCACGTCGCCTGCCTTCGGATCGCAACGCCGGTGGACCAGTTGCCGAGGATAGATTCTCAACTTGCTCAGTCTCAGAATGTGACGGTGAAATACTCGTCACTGAGCCACGGTTCTCAGCCCACAGTCGGCAATGGAAAAGAGCTTGATCAGTTTATGACGCATTATGTTCTGTTACTTTGTTCTTTTAAAGAACAGCTCCAGCAACATGTCCGAGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGTTTAACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGACGAAGACCAGATAGATAGCGATGTTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCAATGGGATTTGGTCCCCTTATCCCAACGGAGAGTGAGAGATCCTTGATGGAGAGGGTGAGGCACGAATTAAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTACGAAAAAGGAGAGCAGGCAAACTTCCTGGTGACACTACATCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTGCAGCTAAAGCAGATAAATAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAACCTTGAAGACCAAACGCAAAAGGCAACGACCATCCATAGCTCGAGAAAAACAAATTCGAAGCATTGAAATACAGGCGCCTGGTGCGGAGGAAACTGGCTATTGTCTATTCTGGGGAGAAGCTGCAAGGTTGAGGTGA 1482 48.52 MTFRNQLSRDLPLHYTNQPQQQQPERPLSDNTLRSILSDQLTDHSPAEDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETTTTVEDNVNTDFLNLHMTASNSVVSHPSGQWLSRPILHRNHSDVIDEVADAADAMIGATASLSRESDDLKNNSSGGGGDDVNNSDDVGVESDGNEGAHGEEAAVNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAQSQNVTVKYSSLSHGSQPTVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDVNLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRQRPSIAREKQIRSIEIQAPGAEETGYCLFWGEAARLR 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5232142 5236763 + Lag0004583.1 Lac6g0614 610383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0614 493 Pfam ELK domain 359 380 IPR005539 GO:0003677(InterPro)
Lac6g0614 493 FunFam homeobox protein knotted-1-like 3 isoform X1 380 441 - -
Lac6g0614 493 MobiDBLite consensus disorder prediction 1 29 - -
Lac6g0614 493 Pfam KNOX1 domain 194 234 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g0614 493 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac6g0614 493 Gene3D - 380 441 - -
Lac6g0614 493 SMART HOX_1 381 446 IPR001356 GO:0003677(InterPro)
Lac6g0614 493 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677(InterPro)
Lac6g0614 493 SMART KNOX1_2 191 235 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g0614 493 SMART KNOX2_2 247 302 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g0614 493 Pfam KNOX2 domain 251 301 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac6g0614 493 MobiDBLite consensus disorder prediction 146 162 - -
Lac6g0614 493 SUPERFAMILY Homeodomain-like 381 445 IPR009057 -
Lac6g0614 493 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 190 441 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac6g0614 493 CDD homeodomain 382 443 IPR001356 GO:0003677(InterPro)
Lac6g0614 493 MobiDBLite consensus disorder prediction 438 464 - -
Lac6g0614 493 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677(InterPro)
Lac6g0614 493 SMART ELK_2 359 380 IPR005539 GO:0003677(InterPro)
Lac6g0614 493 MobiDBLite consensus disorder prediction 145 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2153 Lac-Chr11:37576346 Lac6g0614 Lac-Chr6:5232142 1.30E-101 dispersed
Lac2g0572 Lac-Chr2:4316365 Lac6g0614 Lac-Chr6:5232142 1.70E-162 dispersed
Lac6g0614 Lac-Chr6:5232142 Lac6g2534 Lac-Chr6:43116099 6.50E-29 dispersed
Lac2g0570 Lac-Chr2:4305795 Lac6g0614 Lac-Chr6:5232142 2.00E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24005 PF03791 KNOX2 1.90E-19 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0614 - - - 0.0