Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0638 | ATGGAGATTGTTGGATCTCAAATGTATGCAACAGTCGATCTTGATAAGGCCAGAGTTGGCCGGACGAAAATAGTGGATCAACCATACAGTCCTCAGTGGAACGAGTATTTTCGTATATATTGTGCTCATACAGTGTCACATGTTATATTCACAGTTAAAGATGGAGATGTAATTGGTGCAACATTAATTGGAAGAGCTTATGTGCCCGTTGAGGATATCATAAAGGGATATGTATATGAGAAATGGGTTGAAATATTGGATGAAGACCGTAAGCCTATCTATGGTCGTTCTAGAATCCATGTAAAGTTGCAATTTTCAAGTGCTAATGAAGACAGGAGCTGGTCTCGAGGAATCCCAGATCCGAAGTTCGGTGGTGTACCTTACACATTCTTCAACCAAAGATGGGGTTGCAAAGTTTCTCTTTACCAGGATGCTCATGTTTTAAACAACTTCCTTCCTCGAGTTGGTTTGTCCGGAGGGAATTATCATGAAGTACATAGGTGTTGGGAGGATATTTTTGATGCAATTAGCAATGCGAGACACTTGATTTACATAACTGGTTGGTCTGTGTATACAGAAATAACCTTGATAAGAGACCGAGAAAGACGAAAGACAGGAGAGGATATTACTCTCGGGCAACTGCTAAAGAAGAAGGCAGACGAAGGTGTGACTGTTTTGCTTCTTGTTTGGGATGACAGAACTTCCATTGAAGAGTTCAAAAGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGAAGTATACTTCAGGAACTCAAAGGTACATTGCATTCTATGTCCGCGGAATCCTGATGATGGTAGAAGCATAATTCAGGGGTTTGAGACTGCTACCATGTTTACTCACCACCAGAAAACAATTGTGCTTGATAGTGAAATAGCTGGTGGATCAACAGAGAAAAGAAGGATTGTGAGTTTTGTTGGTGGTATTGATCTGTGTGATGGGAGATATGATACACCGAAACACCCTTTGTTTTCAACTCTAGATTCAATCCACTATAGTGATTTTCACCAGCCGAACTTTTCAGGCTCTTCAATTAGGAAAGGTGGTCCACGGGAACCATGGCATGACATCCATTGCCGCCTAGAAGGGCCTGTTGCTTGGGATATTTTATACAATTTTGAGCAGAGATGGCGAAAGCAAGTTGGAACCAACTTGTTGATTCCAATGCAAAAGCTTGAAGAACACATTACCCGCCCATTAATGGTTTTACCATCAGACGACCCTGACACGTGGAATGTTCAAATATTTCGATCTATTGATGGTGGTGCTGTAGAGGGCTTTCCAGAGATACCTGGAGATGCAGCCAAAATAGGCCTTGTTAGTGGGAAGAATCATGTTATAGATAGGAGTATTCAAGATGCTTATATTAATGCTATTCGCCGAGCAAAAAAATTCATATACATTGAGAATCAATATTTCCTCGGAAGCTCTTATGGTTGGAAATCAAATGGTATAAGGGTAGAAGAAATCAATGCTTTGCATCTTATTCCGAAGGAGATCTCACTGAAGATTGTGAGCAAGATTGAAGCTGGAGAGGGGTTTACAGCATATATTGTGATTCCAATGTGGCCAGAAGGTATTCCTGAGAGTGCATCAGTTCAAGCAATATTAGATTGGCAAAGGAGAACCTTAGACATGATGTACACAGATATAGCTCAGGCTCTTCGGAAGAAGGGTCTCGATGCCAATCCTAGGGATTACCTGACAATCTTCTGCCTTGGCAATCGAGAGAAGAGGAGGCCCGGAGAATATGGACCACCAGAGAAACCAGAACCCAACTCGGATTATGCTCGGGCGCAAGAGTTCCGACGTTTTATGATCTACGTTCATTCAAAAATGATGATAGTTGACGATGAATACATAATTATTGGGTCTGCCAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATTGCAATGGGGGCTTTTCAACCTCATCACTTGGCATCTGGTGAGCCTGCAAGAGGTCAAATCTACGGCTTCCGAGTGGCTCTCTGGTACGAGCATCTTGGTCTGTTTGACAAAGTCTTCCAAAACCCAGAGAGTGAGGACTGCGTCCAGTTCGTAAACAAGCTCGCTCTAGAGAACTGGCAATTTTACTCGGATGATACCTTTGATGGCGATCTTCCTGGTCATCTTCTTTCCTACCCCATTGAAGTAGGCCCCAACGGATCGGTTATGGCGCTGCCAAAATTTGAATTTTTCCCTGATACGAAGGCTCGTGTTCTTGGCCAACTGGCCGAGTATCTACCTCCCATCCTTACCACTTGA | 2301 | 42.89 | MEIVGSQMYATVDLDKARVGRTKIVDQPYSPQWNEYFRIYCAHTVSHVIFTVKDGDVIGATLIGRAYVPVEDIIKGYVYEKWVEILDEDRKPIYGRSRIHVKLQFSSANEDRSWSRGIPDPKFGGVPYTFFNQRWGCKVSLYQDAHVLNNFLPRVGLSGGNYHEVHRCWEDIFDAISNARHLIYITGWSVYTEITLIRDRERRKTGEDITLGQLLKKKADEGVTVLLLVWDDRTSIEEFKRDGLMATHDQETEVYFRNSKVHCILCPRNPDDGRSIIQGFETATMFTHHQKTIVLDSEIAGGSTEKRRIVSFVGGIDLCDGRYDTPKHPLFSTLDSIHYSDFHQPNFSGSSIRKGGPREPWHDIHCRLEGPVAWDILYNFEQRWRKQVGTNLLIPMQKLEEHITRPLMVLPSDDPDTWNVQIFRSIDGGAVEGFPEIPGDAAKIGLVSGKNHVIDRSIQDAYINAIRRAKKFIYIENQYFLGSSYGWKSNGIRVEEINALHLIPKEISLKIVSKIEAGEGFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDIAQALRKKGLDANPRDYLTIFCLGNREKRRPGEYGPPEKPEPNSDYARAQEFRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASGEPARGQIYGFRVALWYEHLGLFDKVFQNPESEDCVQFVNKLALENWQFYSDDTFDGDLPGHLLSYPIEVGPNGSVMALPKFEFFPDTKARVLGQLAEYLPPILTT | 766 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5414661 | 5417173 | - | Lag0004607.1 | Lac6g0638 | 610407 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0638 | 766 | SUPERFAMILY | Phospholipase D/nuclease | 435 | 695 | - | - | |
| Lac6g0638 | 766 | ProSiteProfiles | C2 domain profile. | 1 | 83 | IPR000008 | - | |
| Lac6g0638 | 766 | PANTHER | PHOSPHOLIPASE D | 6 | 753 | IPR015679 | GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER) | |
| Lac6g0638 | 766 | SMART | pld_4 | 612 | 639 | IPR001736 | GO:0003824(InterPro) | |
| Lac6g0638 | 766 | SMART | pld_4 | 284 | 322 | IPR001736 | GO:0003824(InterPro) | |
| Lac6g0638 | 766 | Pfam | C2 domain | 6 | 84 | IPR000008 | - | |
| Lac6g0638 | 766 | FunFam | Phospholipase D | 425 | 658 | - | - | |
| Lac6g0638 | 766 | Gene3D | C2 domain | 3 | 115 | IPR035892 | - | |
| Lac6g0638 | 766 | Gene3D | Endonuclease Chain A | 434 | 656 | - | - | |
| Lac6g0638 | 766 | Pfam | Phospholipase D Active site motif | 614 | 639 | IPR001736 | GO:0003824(InterPro) | |
| Lac6g0638 | 766 | Pfam | Phospholipase D Active site motif | 285 | 322 | IPR001736 | GO:0003824(InterPro) | |
| Lac6g0638 | 766 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 106 | IPR035892 | - | |
| Lac6g0638 | 766 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 612 | 639 | IPR001736 | GO:0003824(InterPro) | |
| Lac6g0638 | 766 | PIRSF | PLD_plant | 1 | 766 | IPR011402 | GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro) | |
| Lac6g0638 | 766 | CDD | C2_plant_PLD | 2 | 105 | - | - | |
| Lac6g0638 | 766 | SUPERFAMILY | Phospholipase D/nuclease | 111 | 401 | - | - | |
| Lac6g0638 | 766 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 284 | 322 | IPR001736 | GO:0003824(InterPro) | |
| Lac6g0638 | 766 | Pfam | Phospholipase D C terminal | 684 | 755 | IPR024632 | - | |
| Lac6g0638 | 766 | Gene3D | Endonuclease Chain A | 158 | 405 | - | - | |
| Lac6g0638 | 766 | FunFam | Phospholipase D delta | 159 | 403 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g2792 | Lac-Chr4:46650671 | Lac6g0638 | Lac-Chr6:5414661 | 0.00E+00 | dispersed | |
| Lac5g0583 | Lac-Chr5:6529221 | Lac6g0638 | Lac-Chr6:5414661 | 4.10E-196 | dispersed | |
| Lac6g0541 | Lac-Chr6:4491594 | Lac6g0638 | Lac-Chr6:5414661 | 1.50E-57 | dispersed | |
| Lac6g0638 | Lac-Chr6:5414661 | Lac6g2572 | Lac-Chr6:43414622 | 2.60E-32 | dispersed | |
| Lac6g0544 | Lac-Chr6:4523124 | Lac6g0638 | Lac-Chr6:5414661 | 1.00E-136 | transposed | |
| Lac11g0678 | Lac-Chr11:7033408 | Lac6g0638 | Lac-Chr6:5414661 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g0638 | K01115 | - | csv:101207900 | 1442.56 |