Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0640 ATGGGAGAAACAAGGGACAACGAATATGAGGAAGAGCTCCTCGACTACGACGAAGAGGAAGAGAAGGCCCCCGATTCTGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGTTTCAGAGACTTCCTTTTGAAGCCAGAGCTTCTCCGTGCTATTGTGGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCACAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCCGGTCAAGTTTCTGCTCTGGTTCTGTGCCATACTAGGGAGCTAGCATACCAGATCTGTCATGAGTTTGAAAGGTTCAGCACTTATCTTCCCGATCTGAAGGTTGCTGTCTTCTATGGTGGGGTGAATATTAAAATTCATAAAGATCTACTGAAAAATGAATGCCCTCATATTGTTGTTGGAACACCCGGAAGGATATTGGCCTTGTCAAGAGATAAGGACCTATCCCTGAAGAATGTCCGACATTTTATCTTGGATGAATGTGACAAGATGCTCGAGTCACTTGATATGCGGAGGGATGTACAGGAAATCTTCAAGATGACTCCTCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTAGATGACGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGATGCACTTGATTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTTCCCTCTATATGCATCCACTCTGGCATGTCGCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAACGGATTCTTGTGGCTACAGATTTGGTTGGTCGAGGTATTGACATTGAACGTGTAAACATTGTCATCAATTATGACATGCCAGACTCGGCTGATACTTATCTACACAGGGTTGGAAGAGCTGGTAGATTTGGTACCAAAGGGCTTGCAATTACTTTTGTATCGTCTGCAGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTAGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACATGCCATCATAG 1284 42.52 MGETRDNEYEEELLDYDEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYMPS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5427233 5431904 + Lag0004609.1 Lac6g0640 610409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0640 427 SMART helicmild6 302 383 IPR001650 -
Lac6g0640 427 Gene3D - 42 258 IPR027417 -
Lac6g0640 427 MobiDBLite consensus disorder prediction 1 29 - -
Lac6g0640 427 CDD DEADc_DDX39 45 252 - -
Lac6g0640 427 SMART ultradead3 65 266 IPR014001 -
Lac6g0640 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Lac6g0640 427 CDD SF2_C_DEAD 263 392 - -
Lac6g0640 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Lac6g0640 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 410 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Lac6g0640 427 MobiDBLite consensus disorder prediction 1 22 - -
Lac6g0640 427 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Lac6g0640 427 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Lac6g0640 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724(InterPro)
Lac6g0640 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lac6g0640 427 Gene3D - 259 426 IPR027417 -
Lac6g0640 427 Pfam Helicase conserved C-terminal domain 275 383 IPR001650 -
Lac6g0640 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0640 Lac-Chr6:5427233 Lac7g0249 Lac-Chr7:1954560 6.20E-68 dispersed
Lac6g0640 Lac-Chr6:5427233 Lac4g2996 Lac-Chr4:48187090 1.70E-62 transposed
Lac6g0640 Lac-Chr6:5427233 Lac12g2459 Lac-Chr12:41655823 1.70E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0640 K12812 - csv:101217346 840.106