Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0665 ATGGATTCTTCACCTAGAACTGTCGAACATATTTCCACATTAACTACCGTCTCCACCACTGCAACTCTTGCGACTTCTCCATCAGAATCTCCTTCGGATTCTTTTTCAGAACTCGTTAATAACTTATTTCCAACAGAGTCCGTCAAGAGTGATTGTGTTGCCCAAGGATTTACAGGGCTTGAATCCCCTCCTATTGTCTTTTCTTCCGTAAATTTGAATGCAAACATTGAATCAAATCTTCTGAAAAGGACTCACTATGATCAATCATCTAATACTAAACTGGTTCCTGAATCCCAGGAATATGATAAGAAGGTATCTGAACAAACAGATAATTTAGATGCCATGTTGAAGGTTGCAGATGCATGTACTGTCTATGAGGATTGCTGGAATTCTATGCCTCAATCATTAACAAATGCTAATTCACATGAAGGCTATGAATACAGTACCAAAGAAACACTTGGTGAACGTTTCCAGCCTCTATCATTTGCTCAACCCAGTATGTGTCTACATTACCTTCAGTTTAAAGAAGTTTCTGCAAATGCTCCTCCAAACAATTTTCTCTCATCAAATTATTTATCCTTGGTTGAGGATACAGAACTCTCTCTTTTGAACTTAGATCCAGTATTCAACAACAGAGTGTCAGTCAATTCATCTCATTCCTTGCATACACTACTGCATCCTGATTCTAGTGGCAATCCTCCCTTGGGAGTTTCGAAGCCTTCAGGTATAGGGTTGCATCTAAATAGCATCACAGCAATGAAGAATCATGAAACTCCATACGAGACCAGTAATTTTGACGTAGACCAGTTTTTTAATCATGAGAAGATCAATAATCTTCTTTCGAAAAGGAAAAGGAAAAGTAATTCAGTGAACAACAGGCGTGATGATTCAAAACGTTGCAACTGCCAAAAAACAAAATGCCTGAAATTGTATTGTGATTGTTTTGCGGCTGGGATCTATTGTCTCGAGTCTTGTTCTTGTCAAGGGTGCTTTAACAAGCCTGAGAATGTACAAACTGTTCTTCAGACAAGGCATGAAATTGAATCGCGAGATCCACATGCATTTGAACCAAAGGTTATTGAGAACTGTAACCAGCTTCCAGTAAATAATAAGAACGGAAGGCATAAAAAAGGGTGTAAATGCAAGAAATCCATGTGTAGTAAACAATACTGTGAATGCTTCCAGGCTAATGTTGGATGCACCGTTAGATGTCAATGCAAGGACTGTAGAAATGTCCATGGCAAGAAAGAAGAACATTCGAGTGGCAGAGCAGATGTTGGAAGCTTTGGAGACAGGTTGATTGCTGACCATGATGTGACAGTATTAAGGAAAGATTTTTCAAATTCTGAGTTTTATAGTCAACAACACAACTTCGTTCCACAGACACCATCATTTCAGTACTCAGATCAAGAAAAGGATTCCCCAAAACCCCGGCTTATGTCCAGAAGATGTCCCCCCTCACCAGAATTTGATCCTACGAGCTCATCTTCTCCAGATTGTAGTGATATATTTATAGAAACAAAGACAAATATATTGGATGTAGATTCTTATCGATGGCAGCAGATGAATTGTGATAATGTTGGAACCTCTTCAACATCATCCATACCATCCAAGCCAAGGGGTTGCCTAAACGTTTCACGTATCGGCCAGCCCGGCATCGGGAGTAGTTCCACCTTTTGGCGTCGTTCACCAGACACACCCCTAATTCAGACAGGTGAGACCAAGACATCTATTAAATGTATTAATGGAAGCTCTCCAGAGAAGAGGCTAGTTTTGCCTCCTCACGGTAGCGAAAATGAGGTTGGGATGAATAATTCTCTAGGGAGGTTGAAGAGCCGTAGATATATATTGAAGTCGATGCCACCCTTCTTGCCCCTCACTCCACGCGACGAATGA 1896 40.45 MDSSPRTVEHISTLTTVSTTATLATSPSESPSDSFSELVNNLFPTESVKSDCVAQGFTGLESPPIVFSSVNLNANIESNLLKRTHYDQSSNTKLVPESQEYDKKVSEQTDNLDAMLKVADACTVYEDCWNSMPQSLTNANSHEGYEYSTKETLGERFQPLSFAQPSMCLHYLQFKEVSANAPPNNFLSSNYLSLVEDTELSLLNLDPVFNNRVSVNSSHSLHTLLHPDSSGNPPLGVSKPSGIGLHLNSITAMKNHETPYETSNFDVDQFFNHEKINNLLSKRKRKSNSVNNRRDDSKRCNCQKTKCLKLYCDCFAAGIYCLESCSCQGCFNKPENVQTVLQTRHEIESRDPHAFEPKVIENCNQLPVNNKNGRHKKGCKCKKSMCSKQYCECFQANVGCTVRCQCKDCRNVHGKKEEHSSGRADVGSFGDRLIADHDVTVLRKDFSNSEFYSQQHNFVPQTPSFQYSDQEKDSPKPRLMSRRCPPSPEFDPTSSSSPDCSDIFIETKTNILDVDSYRWQQMNCDNVGTSSTSSIPSKPRGCLNVSRIGQPGIGSSSTFWRRSPDTPLIQTGETKTSIKCINGSSPEKRLVLPPHGSENEVGMNNSLGRLKSRRYILKSMPPFLPLTPRDE 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5634333 5638543 + Lag0004634.1 Lac6g0665 610434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0665 631 SMART CXC_2 374 415 IPR033467 -
Lac6g0665 631 SMART CXC_2 295 336 IPR033467 -
Lac6g0665 631 ProSiteProfiles CRC domain profile. 296 414 IPR005172 -
Lac6g0665 631 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 298 333 IPR005172 -
Lac6g0665 631 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 376 411 IPR005172 -
Lac6g0665 631 MobiDBLite consensus disorder prediction 460 499 - -
Lac6g0665 631 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 272 628 IPR044522 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2263 Lac-Chr12:39755645 Lac6g0665 Lac-Chr6:5634333 6.00E-41 dispersed
Lac3g0915 Lac-Chr3:7391604 Lac6g0665 Lac-Chr6:5634333 2.70E-29 dispersed
Lac6g0665 Lac-Chr6:5634333 Lac6g3005 Lac-Chr6:47635815 2.20E-29 dispersed
Lac6g0665 Lac-Chr6:5634333 Lac7g0713 Lac-Chr7:5749726 2.10E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24008 PF03638 TCR 2.30E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0665 K21776 - cit:102611790 277.715