Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0665 ATGGATTCTTCACCTAGAACTGTCGAACATATTTCCACATTAACTACCGTCTCCACCACTGCAACTCTTGCGACTTCTCCATCAGAATCTCCTTCGGATTCTTTTTCAGAACTCGTTAATAACTTATTTCCAACAGAGTCCGTCAAGAGTGATTGTGTTGCCCAAGGATTTACAGGGCTTGAATCCCCTCCTATTGTCTTTTCTTCCGTAAATTTGAATGCAAACATTGAATCAAATCTTCTGAAAAGGACTCACTATGATCAATCATCTAATACTAAACTGGTTCCTGAATCCCAGGAATATGATAAGAAGGTATCTGAACAAACAGATAATTTAGATGCCATGTTGAAGGTTGCAGATGCATGTACTGTCTATGAGGATTGCTGGAATTCTATGCCTCAATCATTAACAAATGCTAATTCACATGAAGGCTATGAATACAGTACCAAAGAAACACTTGGTGAACGTTTCCAGCCTCTATCATTTGCTCAACCCAGTATGTGTCTACATTACCTTCAGTTTAAAGAAGTTTCTGCAAATGCTCCTCCAAACAATTTTCTCTCATCAAATTATTTATCCTTGGTTGAGGATACAGAACTCTCTCTTTTGAACTTAGATCCAGTATTCAACAACAGAGTGTCAGTCAATTCATCTCATTCCTTGCATACACTACTGCATCCTGATTCTAGTGGCAATCCTCCCTTGGGAGTTTCGAAGCCTTCAGGTATAGGGTTGCATCTAAATAGCATCACAGCAATGAAGAATCATGAAACTCCATACGAGACCAGTAATTTTGACGTAGACCAGTTTTTTAATCATGAGAAGATCAATAATCTTCTTTCGAAAAGGAAAAGGAAAAGTAATTCAGTGAACAACAGGCGTGATGATTCAAAACGTTGCAACTGCCAAAAAACAAAATGCCTGAAATTGTATTGTGATTGTTTTGCGGCTGGGATCTATTGTCTCGAGTCTTGTTCTTGTCAAGGGTGCTTTAACAAGCCTGAGAATGTACAAACTGTTCTTCAGACAAGGCATGAAATTGAATCGCGAGATCCACATGCATTTGAACCAAAGGTTATTGAGAACTGTAACCAGCTTCCAGTAAATAATAAGAACGGAAGGCATAAAAAAGGGTGTAAATGCAAGAAATCCATGTGTAGTAAACAATACTGTGAATGCTTCCAGGCTAATGTTGGATGCACCGTTAGATGTCAATGCAAGGACTGTAGAAATGTCCATGGCAAGAAAGAAGAACATTCGAGTGGCAGAGCAGATGTTGGAAGCTTTGGAGACAGGTTGATTGCTGACCATGATGTGACAGTATTAAGGAAAGATTTTTCAAATTCTGAGTTTTATAGTCAACAACACAACTTCGTTCCACAGACACCATCATTTCAGTACTCAGATCAAGAAAAGGATTCCCCAAAACCCCGGCTTATGTCCAGAAGATGTCCCCCCTCACCAGAATTTGATCCTACGAGCTCATCTTCTCCAGATTGTAGTGATATATTTATAGAAACAAAGACAAATATATTGGATGTAGATTCTTATCGATGGCAGCAGATGAATTGTGATAATGTTGGAACCTCTTCAACATCATCCATACCATCCAAGCCAAGGGGTTGCCTAAACGTTTCACGTATCGGCCAGCCCGGCATCGGGAGTAGTTCCACCTTTTGGCGTCGTTCACCAGACACACCCCTAATTCAGACAGGTGAGACCAAGACATCTATTAAATGTATTAATGGAAGCTCTCCAGAGAAGAGGCTAGTTTTGCCTCCTCACGGTAGCGAAAATGAGGTTGGGATGAATAATTCTCTAGGGAGGTTGAAGAGCCGTAGATATATATTGAAGTCGATGCCACCCTTCTTGCCCCTCACTCCACGCGACGAATGA 1896 40.45 MDSSPRTVEHISTLTTVSTTATLATSPSESPSDSFSELVNNLFPTESVKSDCVAQGFTGLESPPIVFSSVNLNANIESNLLKRTHYDQSSNTKLVPESQEYDKKVSEQTDNLDAMLKVADACTVYEDCWNSMPQSLTNANSHEGYEYSTKETLGERFQPLSFAQPSMCLHYLQFKEVSANAPPNNFLSSNYLSLVEDTELSLLNLDPVFNNRVSVNSSHSLHTLLHPDSSGNPPLGVSKPSGIGLHLNSITAMKNHETPYETSNFDVDQFFNHEKINNLLSKRKRKSNSVNNRRDDSKRCNCQKTKCLKLYCDCFAAGIYCLESCSCQGCFNKPENVQTVLQTRHEIESRDPHAFEPKVIENCNQLPVNNKNGRHKKGCKCKKSMCSKQYCECFQANVGCTVRCQCKDCRNVHGKKEEHSSGRADVGSFGDRLIADHDVTVLRKDFSNSEFYSQQHNFVPQTPSFQYSDQEKDSPKPRLMSRRCPPSPEFDPTSSSSPDCSDIFIETKTNILDVDSYRWQQMNCDNVGTSSTSSIPSKPRGCLNVSRIGQPGIGSSSTFWRRSPDTPLIQTGETKTSIKCINGSSPEKRLVLPPHGSENEVGMNNSLGRLKSRRYILKSMPPFLPLTPRDE 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5634333 5638543 + Lag0004634.1 Lac6g0665 610434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0665 631 SMART CXC_2 374 415 IPR033467 -
Lac6g0665 631 SMART CXC_2 295 336 IPR033467 -
Lac6g0665 631 ProSiteProfiles CRC domain profile. 296 414 IPR005172 -
Lac6g0665 631 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 298 333 IPR005172 -
Lac6g0665 631 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 376 411 IPR005172 -
Lac6g0665 631 MobiDBLite consensus disorder prediction 460 499 - -
Lac6g0665 631 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 272 628 IPR044522 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0665 K21776 - - cit:102611790 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2263 Lac-Chr12:39755645 Lac6g0665 Lac-Chr6:5634333 6.00E-41 dispersed
Lac3g0915 Lac-Chr3:7391604 Lac6g0665 Lac-Chr6:5634333 2.70E-29 dispersed
Lac6g0665 Lac-Chr6:5634333 Lac6g3005 Lac-Chr6:47635815 2.20E-29 dispersed
Lac6g0665 Lac-Chr6:5634333 Lac7g0713 Lac-Chr7:5749726 2.10E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0665 . 282 417 CPP Transcription Factor Family AT3G22760 51.7 2.8e-40 164.1
Lac6g0665 . 280 417 CPP Transcription Factor Family AT3G22780 53.1 3.1e-40 164.5
Lac6g0665 . 278 417 CPP Transcription Factor Family AT4G14770 50.3 2.2e-40 164.9
Lac6g3005 . 90 519 CPP Transcription Factor Family AT2G20110 61.6 3.5e-140 496.1
Lac3g0915 . 16 539 CPP Transcription Factor Family AT2G20110 50.5 3.7e-126 449.5
Lac6g3005 . 29 526 CPP Transcription Factor Family AT4G29000 57.7 2.3e-153 540.0
Lac3g0915 . 25 538 CPP Transcription Factor Family AT4G29000 52.9 2.8e-143 506.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014749 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 2 0 1 0 1 1 1 1 1 1 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24008 PF03638 TCR 2.30E-10 No_clan Lac TF