Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0688 ATGAGCGATGGACCCTCCGCATTGCGATTTACCGACTCTTCTTGTTGCCTGAAGCGCAAAAGACCTCCCAAGATCCAGATCCCTAACGTCTTACAAGAGATTCAACCCCAAAAACTTGAAGACGCCACTCCCCGAACCGATTCCCTCTCTTCCGATTTTGCAGATCGTGTGGGGGTTTTCTCCGTCAAGGGCAAGAAGAGGTTCATGGAAGATACTCACAAGATCGCTCCTTGCTTGAAAGGCCACTTAAATGATGCCTTTTTTGGCGTTTACGATGGCCATGGAGGCAGGAAGGCAGCGAAATTTGTTGAAGAAAATTTGCACAATAACATACTTGAAGTGGTGGGCAATTGCTCTGGATCTGCAGAGAAGGAGGAAGCAATTAAAGCTGCTTTCTTGAGAACGGACCGAGACTTCTTGAATCTGGGTGTAGCGAGTGGTGTCTGCTGTGTCACAGCTCTGCTACAAGGAGAAGAAGTTGTTGTTTCCAATTTGGGAGATTGTAGGGCTGTTCTGTCTAGAGGTGGAGTAGCTGAAGCAGTAACAAAAGACCATAGAGTTGAACAGGAGGATGAACGGAAAAGAATAGAAAACAAGGGTGGATACGTTGAGATTCATAGGGGGGCATGGAGAGTTCACGGAGTTCTTTCTGTTTCTAGAAGCATTGGAGATGCTCATTTGAAGGACTGGGTGCTGGCAGAGCCTGATTCAAAGGTCCTACTTCTTAGTGAGGACATGGAATTTCTTGTTCTAGCCACTGATGGGCTATGGGAAAAGGTTGGAAACCAGGAGACTGTTGATGTTGTGACACGATTGAGGTTGATGGATAAAAGTTTTGGGCAATCAAAAGGTTCCTTGGGAAGCATTAGCCATGTCCATTGCTCTGCGAATCCAAGTCCATCAAAACTACGGAGAGTTTCATTAGTCACGCAACCAAAAGGGGGGGTGGGCCAGTCTCCAATCTGTGAGAAGGCAAATGATAGCTGTGAAGAAGGTGAATACGACTATGCTTGTGAAATTGAAAGTCCTGGATCAAAATCAAGAAGAATATCATTGGTCAGACATAAAAAGATGAAGACAGAATCTTCACCTAAGGAGAATATTGATAATTGCTATAGGAAGAGACCCACTTCCAGTAGACTTGTGGCTGCTTGTAAGGAACTTGTAGATTTAGCTCTGAGTAGGGGTAGTCTGGATGACATTACCGTAATGATAATCGACTTAAGCCACTTTAGGTGCAAGAGTTAA 1248 44.95 MSDGPSALRFTDSSCCLKRKRPPKIQIPNVLQEIQPQKLEDATPRTDSLSSDFADRVGVFSVKGKKRFMEDTHKIAPCLKGHLNDAFFGVYDGHGGRKAAKFVEENLHNNILEVVGNCSGSAEKEEAIKAAFLRTDRDFLNLGVASGVCCVTALLQGEEVVVSNLGDCRAVLSRGGVAEAVTKDHRVEQEDERKRIENKGGYVEIHRGAWRVHGVLSVSRSIGDAHLKDWVLAEPDSKVLLLSEDMEFLVLATDGLWEKVGNQETVDVVTRLRLMDKSFGQSKGSLGSISHVHCSANPSPSKLRRVSLVTQPKGGVGQSPICEKANDSCEEGEYDYACEIESPGSKSRRISLVRHKKMKTESSPKENIDNCYRKRPTSSRLVAACKELVDLALSRGSLDDITVMIIDLSHFRCKS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5849288 5852105 + Lag0004657.1 Lac6g0688 610457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0688 415 Pfam Protein phosphatase 2C 57 272 IPR001932 -
Lac6g0688 415 SUPERFAMILY PP2C-like 54 409 IPR036457 -
Lac6g0688 415 SMART PP2C_4 46 406 IPR001932 -
Lac6g0688 415 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169(InterPro)
Lac6g0688 415 PANTHER PROTEIN PHOSPHATASE 50 407 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac6g0688 415 Gene3D - 45 414 IPR036457 -
Lac6g0688 415 ProSiteProfiles PPM-type phosphatase domain profile. 56 408 IPR001932 -
Lac6g0688 415 CDD PP2Cc 56 408 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0688 Lac-Chr6:5849288 Lac7g2848 Lac-Chr7:47619653 1.30E-62 dispersed
Lac6g0688 Lac-Chr6:5849288 Lac2g0725 Lac-Chr2:5585682 6.50E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0688 - - - 0.0