Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0701 ATGGATACTGAGTTAAGCCATTACCCATCTTCTTCTCATCTTCAGCTTTCTTCTTCCTCCTTACTACCATTATCAACGGTGTCAGATGGGTGTCCTCCTCCATCGCTGCCATCTTCATCTGCTGATGTATTATCATTAACACCACCAACATGCAGGTTATGCTGGGGATCAGCTATAATTGTCTTTTGGATTTGTGGCATCATGATTACGATAGTTCTGGAGAGGATTCAACTTGAAACTGCTCGGCTGTACAAATTAGCTGGCATAAACCCACTTGCAGGATGCCTACCCACATTGGCTACAATTCCTGTATGGATTGGATTATACAGAGCTCTTTCAAATGTGGCCAACGAGGGTCTCCTCACAGAAGGTTTTTTCTGGATACCCTCTCTGGCTGGTCCAACTACGATTGCTTCTCGACAAAATGGGAGTGGTATCTCTTGGCTCTTTCCATTTGTTGATGGTCATCCACCACTTGGGTGGTCAGATACCTTGGCGTATCTTGTCTTGCCCGTGTTGCTGGTTGTCTCGCAGTACATCTCTGTTCAAATTATGCAATCAACACAGAGTAATGATCCAAACATGAAGAATTCTCAAGCCATAACGAAGTTCCTACCATTAATGATTGGATATTTTGCACTTTCAGTTCCATCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTTAGGTGGTGCAAAAGCCCCGGACAAACAGTTCATCGATGAAATCATCAAACAAGAACAAGCCCGTGTCCAGAGCCAAGCACCCAAGTTAAACTCAGTCTCTGGGAGCACGGTAGCCACAGCCAGACAAGAAGAGAAGCTAACAGCAGAAGGGCCAAAACCTGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGCTAGGATAAGACAGGAAAGAGAAGAAGAAAAAAGGAAAGCTGAAGAGGCAGCTAAGCTTGAATCTCAGACAATAAATGACAGTGACAAGAGCGCAACTGTTGGAGTTTTTGTCAATGGCAGTCTTTCTAGACAGGATGTCAAGGAAGATCAAAACTCCACGTCCACATCTACTATACGTAGAACCGACGTGGACAACGAGGTTGGCAGTACAAGTGATCATCTGCCAAGTGCAACTCAGGACGAGGTAAATCCTCAATATATTTTTTCCAACAATCTTAGAGAAGACGTGGTTAGGAATTCTGTGTATGCCTTGTTTGTTATGGCTTCTAGTTCTGAGTCCAAATACCATTCTTGCAAGCCTGAAAAATTTACTGGACAAAATTTCAAATGTTGGCAACAACAAATGAAATTTTGGCTCACTACCCTAGACCTATATTCTGTAATTTCTGTTAACGAGAAAGGAAAAGAAAAGGTCTCTGAAACCTCTAAAACCAGTGATACTGATCAAAGCATAGTCCTTAAGACCACTGTTGATAAAAATATTGAAGAAAAGGATATTTTATGTCATAGAAATATTCTAAGTGCTTTGTGTGATAGTATCTATAAAATCTTCTGTTCAACCAAAAATTCTGCAGAGTTATGGGGAGCTTTAGAAAAGAAATATGGGTCAGAAGAATTAAGTTTTAAGAGGTATACTGTGGAAAAATGGATTGATTTCAAAATGGTTGATGAGAAGTCTGTGTGTGACCAAATTCATGAATTTGAGAATATTATTTTTGATTTGAAAACGAAGGGAATTGTGTTTGATGATGTTGTCTTGGTTGCTTCTATGATTAAAAAATTACCCCCTTCCTGGTTAGATTTTCAAAGGGTTTTAAAACAAAAACCTGAAAATTTCTCTTATGATGAATTGGTAGTTTCTTTGAGAATTGAGGATAGACATCGTGAGAATTTGAAAGAAATTTCCCTTTCTAGTAGTCAAGCAAAAGCCTTAGTGGTTGATAAAGTCTATAAACCCAAGTCTAAAAATTTCAAGAAAAATGGCCCAAACAGAAATCACCAGAATAATAATAAGCCAAAAGATAAATGTATTAGTCAGAAGAATTTGGGTCCTCCCTGTTGGGTTTGTGGCAAGACGAATCATTTGGCAAGAGATTGTTTCCAACGTAAAGGTGGAACTTCCAAGCCACATGCACCGTCAAATACAAAACCACAGGCCAATGTGGTTACTGCGGACCCGGCCGGCTCCATTCTCCCATCGAGCGGGTATTATATCAGTAATCCCGAGTTAAATTTAGTAGTTAACTCAAATGATTGGTGGTTTGATTCTGGTGCGAGTGTTCATGTGTGTTCTAATAAAAAATTATTTTCTTCGTACCAGGAATCAAGTACCAGATCTGTAAAGATGGGAAATGGGAATGAGGCCATTGTAAAGGGGAAGGAGAAGTTTTATTAA 2373 39.78 MDTELSHYPSSSHLQLSSSSLLPLSTVSDGCPPPSLPSSSADVLSLTPPTCRLCWGSAIIVFWICGIMITIVLERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSTQSNDPNMKNSQAITKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKAPDKQFIDEIIKQEQARVQSQAPKLNSVSGSTVATARQEEKLTAEGPKPGERFKQIKEQEARIRQEREEEKRKAEEAAKLESQTINDSDKSATVGVFVNGSLSRQDVKEDQNSTSTSTIRRTDVDNEVGSTSDHLPSATQDEVNPQYIFSNNLREDVVRNSVYALFVMASSSESKYHSCKPEKFTGQNFKCWQQQMKFWLTTLDLYSVISVNEKGKEKVSETSKTSDTDQSIVLKTTVDKNIEEKDILCHRNILSALCDSIYKIFCSTKNSAELWGALEKKYGSEELSFKRYTVEKWIDFKMVDEKSVCDQIHEFENIIFDLKTKGIVFDDVVLVASMIKKLPPSWLDFQRVLKQKPENFSYDELVVSLRIEDRHRENLKEISLSSSQAKALVVDKVYKPKSKNFKKNGPNRNHQNNNKPKDKCISQKNLGPPCWVCGKTNHLARDCFQRKGGTSKPHAPSNTKPQANVVTADPAGSILPSSGYYISNPELNLVVNSNDWWFDSGASVHVCSNKKLFSSYQESSTRSVKMGNGNEAIVKGKEKFY 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5950990 5955910 + Lag0004670.1 Lac6g0701 610470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0701 790 Coils Coil 298 329 - -
Lac6g0701 790 MobiDBLite consensus disorder prediction 350 384 - -
Lac6g0701 790 NCBIfam membrane protein insertase YidC 74 239 IPR028055 -
Lac6g0701 790 MobiDBLite consensus disorder prediction 646 669 - -
Lac6g0701 790 PANTHER OXA1 74 301 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(InterPro)|GO:0032977(PANTHER)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Lac6g0701 790 Pfam 60Kd inner membrane protein 74 240 IPR028055 -
Lac6g0701 790 MobiDBLite consensus disorder prediction 286 328 - -
Lac6g0701 790 MobiDBLite consensus disorder prediction 266 283 - -
Lac6g0701 790 ProSiteProfiles Zinc finger CCHC-type profile. 679 692 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac6g0701 790 SMART c2hcfinal6 678 694 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac6g0701 790 CDD 5TM_YidC_Alb3 74 240 IPR047196 -
Lac6g0701 790 Pfam gag-polypeptide of LTR copia-type 488 622 - -
Lac6g0701 790 MobiDBLite consensus disorder prediction 266 331 - -
Lac6g0701 790 Pfam Pol polyprotein, beta-barrel domain 745 787 IPR054722 -
Lac6g0701 790 Pfam Zinc knuckle 678 694 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1536 Lac-Chr3:14332225 Lac6g0701 Lac-Chr6:5950990 2.30E-117 dispersed
Lac6g0701 Lac-Chr6:5950990 Lac7g2695 Lac-Chr7:46000716 3.70E-82 dispersed
Lac6g0701 Lac-Chr6:5950990 Lac6g0708 Lac-Chr6:6029948 4.00E-169 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0701 K03217 - csv:101205346 478.018