Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0701 | ATGGATACTGAGTTAAGCCATTACCCATCTTCTTCTCATCTTCAGCTTTCTTCTTCCTCCTTACTACCATTATCAACGGTGTCAGATGGGTGTCCTCCTCCATCGCTGCCATCTTCATCTGCTGATGTATTATCATTAACACCACCAACATGCAGGTTATGCTGGGGATCAGCTATAATTGTCTTTTGGATTTGTGGCATCATGATTACGATAGTTCTGGAGAGGATTCAACTTGAAACTGCTCGGCTGTACAAATTAGCTGGCATAAACCCACTTGCAGGATGCCTACCCACATTGGCTACAATTCCTGTATGGATTGGATTATACAGAGCTCTTTCAAATGTGGCCAACGAGGGTCTCCTCACAGAAGGTTTTTTCTGGATACCCTCTCTGGCTGGTCCAACTACGATTGCTTCTCGACAAAATGGGAGTGGTATCTCTTGGCTCTTTCCATTTGTTGATGGTCATCCACCACTTGGGTGGTCAGATACCTTGGCGTATCTTGTCTTGCCCGTGTTGCTGGTTGTCTCGCAGTACATCTCTGTTCAAATTATGCAATCAACACAGAGTAATGATCCAAACATGAAGAATTCTCAAGCCATAACGAAGTTCCTACCATTAATGATTGGATATTTTGCACTTTCAGTTCCATCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTTAGGTGGTGCAAAAGCCCCGGACAAACAGTTCATCGATGAAATCATCAAACAAGAACAAGCCCGTGTCCAGAGCCAAGCACCCAAGTTAAACTCAGTCTCTGGGAGCACGGTAGCCACAGCCAGACAAGAAGAGAAGCTAACAGCAGAAGGGCCAAAACCTGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGCTAGGATAAGACAGGAAAGAGAAGAAGAAAAAAGGAAAGCTGAAGAGGCAGCTAAGCTTGAATCTCAGACAATAAATGACAGTGACAAGAGCGCAACTGTTGGAGTTTTTGTCAATGGCAGTCTTTCTAGACAGGATGTCAAGGAAGATCAAAACTCCACGTCCACATCTACTATACGTAGAACCGACGTGGACAACGAGGTTGGCAGTACAAGTGATCATCTGCCAAGTGCAACTCAGGACGAGGTAAATCCTCAATATATTTTTTCCAACAATCTTAGAGAAGACGTGGTTAGGAATTCTGTGTATGCCTTGTTTGTTATGGCTTCTAGTTCTGAGTCCAAATACCATTCTTGCAAGCCTGAAAAATTTACTGGACAAAATTTCAAATGTTGGCAACAACAAATGAAATTTTGGCTCACTACCCTAGACCTATATTCTGTAATTTCTGTTAACGAGAAAGGAAAAGAAAAGGTCTCTGAAACCTCTAAAACCAGTGATACTGATCAAAGCATAGTCCTTAAGACCACTGTTGATAAAAATATTGAAGAAAAGGATATTTTATGTCATAGAAATATTCTAAGTGCTTTGTGTGATAGTATCTATAAAATCTTCTGTTCAACCAAAAATTCTGCAGAGTTATGGGGAGCTTTAGAAAAGAAATATGGGTCAGAAGAATTAAGTTTTAAGAGGTATACTGTGGAAAAATGGATTGATTTCAAAATGGTTGATGAGAAGTCTGTGTGTGACCAAATTCATGAATTTGAGAATATTATTTTTGATTTGAAAACGAAGGGAATTGTGTTTGATGATGTTGTCTTGGTTGCTTCTATGATTAAAAAATTACCCCCTTCCTGGTTAGATTTTCAAAGGGTTTTAAAACAAAAACCTGAAAATTTCTCTTATGATGAATTGGTAGTTTCTTTGAGAATTGAGGATAGACATCGTGAGAATTTGAAAGAAATTTCCCTTTCTAGTAGTCAAGCAAAAGCCTTAGTGGTTGATAAAGTCTATAAACCCAAGTCTAAAAATTTCAAGAAAAATGGCCCAAACAGAAATCACCAGAATAATAATAAGCCAAAAGATAAATGTATTAGTCAGAAGAATTTGGGTCCTCCCTGTTGGGTTTGTGGCAAGACGAATCATTTGGCAAGAGATTGTTTCCAACGTAAAGGTGGAACTTCCAAGCCACATGCACCGTCAAATACAAAACCACAGGCCAATGTGGTTACTGCGGACCCGGCCGGCTCCATTCTCCCATCGAGCGGGTATTATATCAGTAATCCCGAGTTAAATTTAGTAGTTAACTCAAATGATTGGTGGTTTGATTCTGGTGCGAGTGTTCATGTGTGTTCTAATAAAAAATTATTTTCTTCGTACCAGGAATCAAGTACCAGATCTGTAAAGATGGGAAATGGGAATGAGGCCATTGTAAAGGGGAAGGAGAAGTTTTATTAA | 2373 | 39.78 | MDTELSHYPSSSHLQLSSSSLLPLSTVSDGCPPPSLPSSSADVLSLTPPTCRLCWGSAIIVFWICGIMITIVLERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSTQSNDPNMKNSQAITKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKAPDKQFIDEIIKQEQARVQSQAPKLNSVSGSTVATARQEEKLTAEGPKPGERFKQIKEQEARIRQEREEEKRKAEEAAKLESQTINDSDKSATVGVFVNGSLSRQDVKEDQNSTSTSTIRRTDVDNEVGSTSDHLPSATQDEVNPQYIFSNNLREDVVRNSVYALFVMASSSESKYHSCKPEKFTGQNFKCWQQQMKFWLTTLDLYSVISVNEKGKEKVSETSKTSDTDQSIVLKTTVDKNIEEKDILCHRNILSALCDSIYKIFCSTKNSAELWGALEKKYGSEELSFKRYTVEKWIDFKMVDEKSVCDQIHEFENIIFDLKTKGIVFDDVVLVASMIKKLPPSWLDFQRVLKQKPENFSYDELVVSLRIEDRHRENLKEISLSSSQAKALVVDKVYKPKSKNFKKNGPNRNHQNNNKPKDKCISQKNLGPPCWVCGKTNHLARDCFQRKGGTSKPHAPSNTKPQANVVTADPAGSILPSSGYYISNPELNLVVNSNDWWFDSGASVHVCSNKKLFSSYQESSTRSVKMGNGNEAIVKGKEKFY | 790 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5950990 | 5955910 | + | Lag0004670.1 | Lac6g0701 | 610470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0701 | 790 | Coils | Coil | 298 | 329 | - | - | |
Lac6g0701 | 790 | MobiDBLite | consensus disorder prediction | 350 | 384 | - | - | |
Lac6g0701 | 790 | NCBIfam | membrane protein insertase YidC | 74 | 239 | IPR028055 | - | |
Lac6g0701 | 790 | MobiDBLite | consensus disorder prediction | 646 | 669 | - | - | |
Lac6g0701 | 790 | PANTHER | OXA1 | 74 | 301 | IPR001708 | GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(InterPro)|GO:0032977(PANTHER)|GO:0051205(PANTHER)|GO:0072598(PANTHER) | |
Lac6g0701 | 790 | Pfam | 60Kd inner membrane protein | 74 | 240 | IPR028055 | - | |
Lac6g0701 | 790 | MobiDBLite | consensus disorder prediction | 286 | 328 | - | - | |
Lac6g0701 | 790 | MobiDBLite | consensus disorder prediction | 266 | 283 | - | - | |
Lac6g0701 | 790 | ProSiteProfiles | Zinc finger CCHC-type profile. | 679 | 692 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Lac6g0701 | 790 | SMART | c2hcfinal6 | 678 | 694 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Lac6g0701 | 790 | CDD | 5TM_YidC_Alb3 | 74 | 240 | IPR047196 | - | |
Lac6g0701 | 790 | Pfam | gag-polypeptide of LTR copia-type | 488 | 622 | - | - | |
Lac6g0701 | 790 | MobiDBLite | consensus disorder prediction | 266 | 331 | - | - | |
Lac6g0701 | 790 | Pfam | Pol polyprotein, beta-barrel domain | 745 | 787 | IPR054722 | - | |
Lac6g0701 | 790 | Pfam | Zinc knuckle | 678 | 694 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g1536 | Lac-Chr3:14332225 | Lac6g0701 | Lac-Chr6:5950990 | 2.30E-117 | dispersed | |
Lac6g0701 | Lac-Chr6:5950990 | Lac7g2695 | Lac-Chr7:46000716 | 3.70E-82 | dispersed | |
Lac6g0701 | Lac-Chr6:5950990 | Lac6g0708 | Lac-Chr6:6029948 | 4.00E-169 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g0701 | K03217 | - | csv:101205346 | 478.018 |