Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0705 ATGTGCTTCATTTCTTCGTCTCCCGTCGCCGATCCCGAACTCGTCGTCCAAGAAGTTCTCTCGAGCATCAACAACGCAACAACAAGGAGGAACTTGGGGTTCCTGTCGTGCGGAACCGGAAACCCAATAGACGACTGCTGGCGGTGCGACCCGAATTGGGAGAAGAACCGGAAGCGGCTGGCGGACTGCGCCATTGGGTTCGGGAAGCGAGCCATCGGCGGCAAGAACGGCAGATTCTACGTAGTGACGGACCCATCGGACGGCGACGTGGTGAACCCAAAACCGGGCACTCTCCGGCACGCCGTAATCCAAAAGGAACCGTTGTGGATCATCTTCAAACGCGACATGGTAATAAAGCTGAAAGCAGAGCTGCTGATGAACTCGTTCAAGACGATCGACGGGCGCGGCGCGTCGGTGCACATCGCCGGCGGGCCGTGCATAACGATCCAGTTCGTGACGAACATCATAATCCACGGCATAAACATCCACGACTGCAAGCAGGGAGGGAACACGTACGTGAGAGATTCGCCGGAGCATTACGGCTGGAGGACTCTGTCGGACGGCGACGGAGTTTCCATATTTGGCGGCAGCCATATTTGGATCGACCATTGTTCTCTGTCGAATTGCCGAGATGGGTTGATCGATGCGATTCATGGGTCGACGGCGATTACTGTTTCCAACAATTATATGACCCATCATAACAAAGTTATGCTTTTGGGACATAGTGATTCCTACACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTCGGTGAGGGTCTCGTCCAAAGAATGCCGCGATGCCGACATGGGTATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTATGCCATTGGAGGAAGTGCATCTCCTACTATTAACAGCCAAGGAAATAGATACCTTGCTCCCAACAACCAAGATAGAAAAGAGGTGACTAAACGTGAGGATGCACCACAAAGCAAATGGAAGAAATGGAATTGGAGATCGGATGGAGATTTGATGTTGAATGGAGCATTCTTCACAAGGTCTGGTGCAGGATCGTCGTCCAGCTATGCGAGGGCATCGAGCTTGAGTGCAAAGTCATCGTCGTTGGTCAGTTCAATGACAGCGGGAGCGGGAGTTTTGAAGTGCAGAAAGGGCTCTCAATGCTAG 1170 51.37 MCFISSSPVADPELVVQEVLSSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGRFYVVTDPSDGDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNQDRKEVTKREDAPQSKWKKWNWRSDGDLMLNGAFFTRSGAGSSSSYARASSLSAKSSSLVSSMTAGAGVLKCRKGSQC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5993368 5995301 - Lag0004674.1 Lac6g0705 610474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0705 389 FunFam Pectate lyase 40 382 - -
Lac6g0705 389 PANTHER PECTATE LYASE 18-RELATED 25 386 IPR045032 GO:0030570(InterPro)
Lac6g0705 389 Pfam Pectate lyase 127 304 IPR002022 -
Lac6g0705 389 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Lac6g0705 389 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Lac6g0705 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Lac6g0705 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Lac6g0705 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Lac6g0705 389 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Lac6g0705 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Lac6g0705 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Lac6g0705 389 SMART amb_all 115 312 IPR002022 -
Lac6g0705 389 SUPERFAMILY Pectin lyase-like 26 384 IPR011050 -
Lac6g0705 389 Gene3D - 40 382 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0659 Lac-Chr10:5127099 Lac6g0705 Lac-Chr6:5993368 4.30E-121 dispersed
Lac11g2537 Lac-Chr11:41447143 Lac6g0705 Lac-Chr6:5993368 1.60E-172 dispersed
Lac1g2192 Lac-Chr1:43364350 Lac6g0705 Lac-Chr6:5993368 3.10E-153 dispersed
Lac6g0050 Lac-Chr6:432129 Lac6g0705 Lac-Chr6:5993368 3.20E-136 dispersed
Lac6g0705 Lac-Chr6:5993368 Lac8g2540 Lac-Chr8:43165558 2.40E-188 dispersed
Lac6g0705 Lac-Chr6:5993368 Lac12g2078 Lac-Chr12:37893849 3.20E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0705 K01728 - csv:101208076 729.939