Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0708 ATGGCTTCCATATCTCCTTACCGCCCAAACTTTGTCTTCTCTTCGTTTCCGAACCGGGTTCCGACCTCGAATCCTCTATTTCATGGAGTTCAATTCCGGGGTTTATCCCACCATAAGCCTTTCCTTCGCGGTTCCCTTGCCGTGGCGAGATTCGGGTTCAAACCCGAGTTCTTGCCTGACCCGGATAGCGCCGAGGGCTTTGTTAGGGGGCTGTTCGACAAAGCTGAGAGCGTTCTTTACACGATTGCCGACGCCGCCGTGTCTGCTTCGCCGGAGAATGTCTCCACCACCACCAAGCAAACTGACGATTGGTTTACTGGGATTACCAATTATATGGAGAGCGTCCTTAAAATTCTTAAGGATGGACTTTCTACTCTACATGTTCCTTATGCCTATGGTTTTGCCATTATACTCCTTACGGTTCTTGTTAAGGCTGCTACGTTTCCTTTGACGAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCGCAAGTAAAGGCTGTTCAACAACGCTATGCTGGGGATCAGGAGAGGATTCAACTTGAAACTGCTCGGCTGTACAAATTAGCTGGCATAAACCCACTTGCAGGATGCCTACCCACATTGGCTACAATTCCTGTATGGATTGGATTATACAGAGCTCTTTCAAATGTGGCCAACGAGGGTCTCCTCACAGAAGGTTTTTTCTGGATACCCTCTCTGGCTGGTCCAACTACGATTGCTTCTCGACAAAATGGGAGTGGTATCTCTTGGCTCTTTCCATTTGTTGATGGTCATCCACCACTTGGGTGGTCAGATACCTTGGCGTATCTTGTCTTGCCCGTGTTGCTGGTTGTCTCGCAGTACATCTCTGTTCAAATTATGCAATCAACACAGAGTAATGATCCAAACATGAAGAATTCTCAAGCCATAACGAAGTTCCTACCATTAATGATTGGATATTTTGCACTTTCAGTTCCATCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAGAAGTTAGGTGGTGCAAAAGCCCCGGACAAACAGTTCATCGATGAAATCATCAAACAAGAACAAGCCCGTGTCCAGAGCCAAGCACCCAAGTTAAACTCAGTCTCTGGGAGCACGGTAGCCACAGCCAGACAAGAAGAGAAGCTAACAGCAGAAGGGCCAAAACCTGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGGTAGGATAAGACAGGAAAGAGAAGAAGAAAAAAGGAAAGCTGAAGAGGCAGCTAAGCTTGAATCTCAGACAATAAATGACAGTGACAAGAGCGCAACTGTTGGAGTTTTTGTCAATGGCAGTCTTTCTAGACAGGATGTCAAGGAAGATCAAAACTCCACGTCCACATCTACTATGCGTAGAACCGACGTGGACAACGAGGTTGGCAGTACAAGTGATCATCTGCCAAGTGCAGCTCAGGACGAGGGAGTATTCACCGGTGTGGCCAAGGATGCCAAACTAAATGGAGAAGATCAAATAGAGTAA 1539 46.65 MASISPYRPNFVFSSFPNRVPTSNPLFHGVQFRGLSHHKPFLRGSLAVARFGFKPEFLPDPDSAEGFVRGLFDKAESVLYTIADAAVSASPENVSTTTKQTDDWFTGITNYMESVLKILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSTQSNDPNMKNSQAITKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKAPDKQFIDEIIKQEQARVQSQAPKLNSVSGSTVATARQEEKLTAEGPKPGERFKQIKEQEGRIRQEREEEKRKAEEAAKLESQTINDSDKSATVGVFVNGSLSRQDVKEDQNSTSTSTMRRTDVDNEVGSTSDHLPSAAQDEGVFTGVAKDAKLNGEDQIE 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6029948 6033813 - Lag0004677.1 Lac6g0708 610477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0708 512 PANTHER OXA1 46 395 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(InterPro)|GO:0032977(PANTHER)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Lac6g0708 512 MobiDBLite consensus disorder prediction 372 389 - -
Lac6g0708 512 Coils Coil 404 435 - -
Lac6g0708 512 Pfam 60Kd inner membrane protein 132 346 IPR028055 -
Lac6g0708 512 NCBIfam membrane protein insertase YidC 132 346 IPR028055 -
Lac6g0708 512 MobiDBLite consensus disorder prediction 450 488 - -
Lac6g0708 512 MobiDBLite consensus disorder prediction 372 438 - -
Lac6g0708 512 MobiDBLite consensus disorder prediction 392 434 - -
Lac6g0708 512 CDD 5TM_YidC_Alb3 133 346 IPR047196 -
Lac6g0708 512 MobiDBLite consensus disorder prediction 450 512 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2231 Lac-Chr5:40993737 Lac6g0708 Lac-Chr6:6029948 5.70E-08 dispersed
Lac6g0708 Lac-Chr6:6029948 Lac7g2695 Lac-Chr7:46000716 3.20E-119 dispersed
Lac6g0701 Lac-Chr6:5950990 Lac6g0708 Lac-Chr6:6029948 4.00E-169 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0708 K03217 - csv:101205346 832.787