Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0714 ATGGAAAATGGCTTCGCTTCTCCTCGAAGTGATGCGTTTCCTGTCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCTTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGATGTAAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTAGATGGAGAAACAAGCAGAGTAATGAAAGGGGTTCAACATGGGGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTAAGGAATATATGGCAGCACGTATTTCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCAAATCCTAAGAAATGGGTCAGATAGGTATGATGATAGCCAGTTCCTAAGAGGAGAGGAGCTATTTTCAGTGAGGAAAAGAAAAGATGTTGATAAGCATGAGGACAAAGACTTTGGGGACACTTCTTCCACAAAGAAAGCCAGAGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATTCTTGATCTGATGAGTGTCCCATGGCTCACTAGGGAAAATGTAGCTAGCCATTTGCAGAAATATCGTCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACATACTGATTCGAGTTCAAAGGATGGAGATGGAAACTTCAGCCTCCGTAGCTCATTAGCCGTGCCACAGAATGATGTCACAAATAGCAGTTTTAGTTTTTCAGGTGATAACTTCCTTCTTCAGAATGTAGATTCCATAGGCTGCGAAGTTGATAGGAAAAGGATTGTTCAAGAGCACACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCAGTAAAGACACGGTGTACACAAATGAAATTCAACACCTCTTTTGCCTCCGTTGAACCTGAAGGGAAGTTTGCAGCATTTGATCCAAGCAACCGAACATGTTACCCTTGGGTTGAAGCTCCAGAAATAAAGTTCAAACAAGAAAGCAAGCCACTTGTCCATTTAGAAGGAGATTTCAGACAGTTCCCTCCAACGGTTCTGCCACATCAAGTTCAAATCGACCAACTACAATCGATTTCATCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCGCCATATTCTGAGGACTGTAGTCAACAGATGGTCCATCTAAATCTACCAAAGACTCCTACTGATTCATTTTCTGGGAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGAGCCCATTTCAACTACTACCACTCCATTGGGCATGAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTGGGAAATGGGTTACCTTTTGCAACCTTTGATGAAGACTTGCAGGGTTATTTGCTTCAAGATGGTTGTTATCCAAAGAACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGTATCTTCAATGAAGTTCCTACGCACCTTTACGATGCAATGAGGTTTGGCTATGAGTATTCCTATGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1758 41.58 MENGFASPRSDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIQEGRDIEGHDVIEGIQILRNGSDRYDDSQFLRGEELFSVRKRKDVDKHEDKDFGDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMSVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSSSKDGDGNFSLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRIVQEHTSEPKRAAARSVPEPVKTRCTQMKFNTSFASVEPEGKFAAFDPSNRTCYPWVEAPEIKFKQESKPLVHLEGDFRQFPPTVLPHQVQIDQLQSISSISSGRSATEKDIASSIESKPPYSEDCSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFEPISTTTTPLGMKNQNFNLSCISTDLGNGLPFATFDEDLQGYLLQDGCYPKNLEHQIIEFPDYGDPGIFNEVPTHLYDAMRFGYEYSYDPTEYPVIDEGLFIA 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6074972 6077792 + Lag0004683.1 Lac6g0714 610483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0714 585 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Lac6g0714 585 SUPERFAMILY CheY-like 16 140 IPR011006 -
Lac6g0714 585 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Lac6g0714 585 Gene3D - 194 257 - -
Lac6g0714 585 FunFam Two-component response regulator 17 172 - -
Lac6g0714 585 MobiDBLite consensus disorder prediction 426 449 - -
Lac6g0714 585 Gene3D - 17 167 - -
Lac6g0714 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 305 IPR045279 GO:0009736(InterPro)
Lac6g0714 585 FunFam Two-component response regulator 194 257 - -
Lac6g0714 585 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Lac6g0714 585 CDD REC_typeB_ARR-like 19 133 - -
Lac6g0714 585 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Lac6g0714 585 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
Lac6g0714 585 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0297 Lac-Chr5:3017247 Lac6g0714 Lac-Chr6:6074972 1.10E-21 dispersed
Lac5g2898 Lac-Chr5:47156859 Lac6g0714 Lac-Chr6:6074972 6.10E-39 dispersed
Lac6g0714 Lac-Chr6:6074972 Lac6g2882 Lac-Chr6:46483755 1.40E-62 dispersed
Lac6g0714 Lac-Chr6:6074972 Lac7g0922 Lac-Chr7:7732095 7.40E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24011 PF00072 Response_reg 1.20E-24 CL0304 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0714 K14491 - csv:101204370 1066.22