Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0745 ATGGATATTACTGAGGTTGAAGAAAATCATTTTGCTGCAAGTGATGCCAAGCTACACGGAGGAATGTGCAAGACTCTTTCTGCAATATATTGTAAAATATTATCAATTTTTCCTTCATTGGAAGATGCACGACCTCGGAGCAGATCTGGTATCCAGGCATTATGTTCGTTGCATGTAGCACTTGAAAAAGCCAAGAATACTCTCCAACATTGTACCGAGAGCAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTACTGTCAAAGTTTGAGAAGGTCAAAAGTGCTCTACAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAACTGGGGAGTACTCAATTTTTCCTAGATCCTTTGGAGAAGCAAGTTGGCGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAAAAATGAGCTTGAAGTGTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATCGACCGGTCTCGCAATGAAGAGGACAAGAGGAAGGAATCAATTGTGGCATATCTTTTGCATCTCATGAGAAAGTACTCCAAGTTATTTAGAAGTGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTTGAGGACAGTGGACCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACGAAGCTTGGTTCCTTTACTTTGAAGCCCAAAAATCGCAGATTGGAGCAGGTTCCCCTTCCACCTGATGAGTTGAGGTGTCCAATATCATTACAGCTTATGTATGATCCAGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAAAAGTGGTTAAATGATGGCCATAACACCTGCCCAAAAACTCAACAGACACTCTCTCATCTTTCACTGACACCAAATTACTGTGTCAAGGGGCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTATTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGACTTGCGTTATCTGAATCAGAGTCTCTAAATTCGTCACCCATGGACACTCTTGGTTCTTGTAAATTAAAAGATGTTAAAGTTGTTCCGCTAGAAGAAAATGGAATAACTGAGGAGATAAAAGGAAATGTAGTGGATGATAACTCTACTGAATACCAAGAGTCCGACATAAATATGCTTACATACGAACAGTATTTGAAAGTCTTGAATGAAGAAGCTGACTTGAGGAAAAAGTCGGCGGTTGTGGAGAAAATAAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATTTTTATGGGAGCCAATGGATTTGTCCAGGGACTTCTTCGCTACTTAGAGATAGCTGTACGAGAACAAAATGTCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGATAGGAACAAGCAAATAATGCTGGCAGAAGGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCACACGGATATGCAACGGCCCTCTATCTCAATGTCTCCTGCCTGGAAGAAGCGAAAACTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTCCACGCTAATACCGAGACACTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCTACTGTGCCCTCCAATATTCCCAACCTGCTTTCTTCTGGAATCATCAGGGGACTTCAATCCCTTCTTGAAGCCTCCCTCGATCGAACATGGACGGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGTGATCAAATGTCATCTACTCCAGAACTGATCAGTGGTTTGGCAGCAATATTAGACAGTGGTGAACCCATTGAGCAGGAACAAGCAGTGGCATGTCTCTTGATTCTGTGCAATGGGAATGAGAAGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGTTGGTGTCGATGTCTGTGAATGGGACAGCTAGAGGTAAGGAGAAGGCTCAAAAGCTTCTAATGTTGTTCAGGGAGCAACGACAACGGGAGCCACCGGCACCGACATTGGTACTGCAACCAAAACCAACACCGACCGAGCAATCAGAGAGTAGCGGGACATCCATGCCTGGGGCGGAATCAAAGCCACTGTGCAAGTCAATTTCAAGAAGAAAAACAGCAAAAGCTTTAAGCTTTTTGTGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAA 2328 43.21 MDITEVEENHFAASDAKLHGGMCKTLSAIYCKILSIFPSLEDARPRSRSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLSKFEKVKSALQDSLKRVEDIVPQSIGYQVQEIMKELGSTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDKNELEVFHQAAIRLGINSSRAALAERRALKKLIDRSRNEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGGNGQAFERQLTKLGSFTLKPKNRRLEQVPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLNDGHNTCPKTQQTLSHLSLTPNYCVKGLIANWCEQYGVPIPDGPPDSLDLNYWRLALSESESLNSSPMDTLGSCKLKDVKVVPLEENGITEEIKGNVVDDNSTEYQESDINMLTYEQYLKVLNEEADLRKKSAVVEKIRLLLKDDEEARIFMGANGFVQGLLRYLEIAVREQNVKAQESGAMALFNLAVNNDRNKQIMLAEGVISLLEEMIMNPNSHGYATALYLNVSCLEEAKTIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLLSSGIIRGLQSLLEASLDRTWTEKCIAILINLASSESGSDQMSSTPELISGLAAILDSGEPIEQEQAVACLLILCNGNEKCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREPPAPTLVLQPKPTPTEQSESSGTSMPGAESKPLCKSISRRKTAKALSFLWKSKSYSVYQC 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6319465 6323391 - Lag0004714.1 Lac6g0745 610514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0745 775 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lac6g0745 775 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g0745 775 Gene3D - 413 715 IPR011989 -
Lac6g0745 775 PANTHER U BOX DOMAIN-CONTAINING 22 712 - -
Lac6g0745 775 MobiDBLite consensus disorder prediction 224 247 - -
Lac6g0745 775 MobiDBLite consensus disorder prediction 713 751 - -
Lac6g0745 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Lac6g0745 775 Pfam U-box domain 280 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac6g0745 775 SUPERFAMILY RING/U-box 279 355 - -
Lac6g0745 775 CDD RING-Ubox_PUB 280 332 IPR045210 -
Lac6g0745 775 SUPERFAMILY ARM repeat 412 708 IPR016024 -
Lac6g0745 775 Gene3D - 11 105 IPR036537 GO:0007166(InterPro)
Lac6g0745 775 SMART arm_5 543 584 IPR000225 GO:0005515(InterPro)
Lac6g0745 775 SMART arm_5 503 542 IPR000225 GO:0005515(InterPro)
Lac6g0745 775 SMART arm_5 458 502 IPR000225 GO:0005515(InterPro)
Lac6g0745 775 MobiDBLite consensus disorder prediction 725 742 - -
Lac6g0745 775 MobiDBLite consensus disorder prediction 221 253 - -
Lac6g0745 775 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0553 Lac-Chr2:4169839 Lac6g0745 Lac-Chr6:6319465 6.80E-26 dispersed
Lac6g0745 Lac-Chr6:6319465 Lac7g2706 Lac-Chr7:46146918 1.60E-37 dispersed
Lac5g2111 Lac-Chr5:39745991 Lac6g0745 Lac-Chr6:6319465 1.00E-78 transposed
Lac8g1944 Lac-Chr8:37798144 Lac6g0745 Lac-Chr6:6319465 1.30E-08 transposed
Lac9g1943 Lac-Chr9:39217874 Lac6g0745 Lac-Chr6:6319465 1.30E-13 transposed
Lac13g0067 Lac-Chr13:491820 Lac6g0745 Lac-Chr6:6319465 6.20E-228 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0745 - - - 0.0