Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0805 ATGTTCAATTGGGCCAGTCTCCAGATTCGGCCCAATGACGGCTACCCGTATGGGGCAGCGAAGGAATGGCAGAGGCCCAAAGCCCACGAAAAAGCTCGATATTTTGAGAGCGAGTCGTTCAGAAGAATATCCCAACGCGATCGATCGAGCAACCCACAGAAGCGATTAGTCGAGACTAATCGCCAAAAGGGATCGATGCCGAGTCTTTCGACTCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTGTCGATGGCAAGGTATACGACGTAACATCATATTTGGATGAGCATCCCGGTGGAGATGATGTTATTATCGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGACGCCAGAGAGCTGATGGAGAAGTTCTACATCGGCGTGCTTGATGAGTCTTCCTCAGCAAGCCCAGAACTCGAAACGAAGCGACCAGACGGTTATGCAGCTCAGGTTCAGGCCTTGACAAAGCAATACTGGGCGGCTCCTGTTGCAATACTTGTACTGTATGATAGAGAACTTGTTATTGTTGAGAAGATGCAGGCCAGGCCAGTTTGTTCACAGGCTGTTCAGAAAAATACTCTGTACGTCGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTTCACGCCGCCTTCATTCCCTTCGGCGACATCAAAGACGTCAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTTACTTTCTTGGAAAAGGAAGACGCGTCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCCGCCCAGCCTATTTGGGCGGATGCGGATACATGGTTTGAGAGGCAGCAACAAGAGGAGGAAATGCAACGCATTCAGGCTGAGAACCGAGCAACTATGCAGGCTGCTGAGGAGCTGCACAGGAAGAAACTAGCCCAGGAGCGGGAAGGGGAAAAAGAAGACGAGATGGACACCAAGGATGATCCCATGGCTAAGGCTGAAGCCGAGGTTTTAAGACAGAACAGCTAA 1116 51.08 MFNWASLQIRPNDGYPYGAAKEWQRPKAHEKARYFESESFRRISQRDRSSNPQKRLVETNRQKGSMPSLSTLYSIQEVSQHSSNDDCWIIVDGKVYDVTSYLDEHPGGDDVIIAATGRDATDDFEDAGHSKDARELMEKFYIGVLDESSSASPELETKRPDGYAAQVQALTKQYWAAPVAILVLYDRELVIVEKMQARPVCSQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRATMQAAEELHRKKLAQEREGEKEDEMDTKDDPMAKAEAEVLRQNS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6905129 6910364 + Lag0004774.1 Lac6g0805 610574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0805 371 Coils Coil 311 338 - -
Lac6g0805 371 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 101 108 IPR018506 GO:0020037(InterPro)
Lac6g0805 371 Gene3D - 193 344 IPR012677 -
Lac6g0805 371 MobiDBLite consensus disorder prediction 331 363 - -
Lac6g0805 371 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 70 146 IPR001199 -
Lac6g0805 371 SMART rrm1_1 209 282 IPR000504 GO:0003723(InterPro)
Lac6g0805 371 CDD RRM_PPIE 210 284 IPR034168 GO:0003723(InterPro)
Lac6g0805 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723(InterPro)
Lac6g0805 371 FunFam Peptidyl-prolyl cis-trans isomerase 200 353 - -
Lac6g0805 371 MobiDBLite consensus disorder prediction 331 371 - -
Lac6g0805 371 Pfam Cytochrome b5-like Heme/Steroid binding domain 76 146 IPR001199 -
Lac6g0805 371 Pfam RNA recognition motif 210 279 IPR000504 GO:0003723(InterPro)
Lac6g0805 371 PRINTS Cytochrome B5 signature 120 127 IPR001199 -
Lac6g0805 371 PRINTS Cytochrome B5 signature 95 105 IPR001199 -
Lac6g0805 371 PRINTS Cytochrome B5 signature 105 119 IPR001199 -
Lac6g0805 371 PRINTS Cytochrome B5 signature 133 145 IPR001199 -
Lac6g0805 371 MobiDBLite consensus disorder prediction 40 63 - -
Lac6g0805 371 SMART Cyt_b5_2 73 146 IPR001199 -
Lac6g0805 371 FunFam Cytochrome b5 type B 68 150 - -
Lac6g0805 371 SUPERFAMILY RNA-binding domain, RBD 205 295 IPR035979 GO:0003676(InterPro)
Lac6g0805 371 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 68 149 IPR036400 -
Lac6g0805 371 PANTHER ATPASE E1 202 370 - -
Lac6g0805 371 MobiDBLite consensus disorder prediction 40 54 - -
Lac6g0805 371 Gene3D - 67 151 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1655 Lac-Chr11:29761450 Lac6g0805 Lac-Chr6:6905129 9.60E-17 dispersed
Lac6g0805 Lac-Chr6:6905129 Lac7g0465 Lac-Chr7:3688907 2.30E-26 dispersed
Lac10g0032 Lac-Chr10:380064 Lac6g0805 Lac-Chr6:6905129 4.90E-08 transposed
Lac9g2401 Lac-Chr9:43127052 Lac6g0805 Lac-Chr6:6905129 7.90E-09 transposed
Lac10g0147 Lac-Chr10:1115330 Lac6g0805 Lac-Chr6:6905129 3.20E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0805 - - - 0.0