Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0805 ATGTTCAATTGGGCCAGTCTCCAGATTCGGCCCAATGACGGCTACCCGTATGGGGCAGCGAAGGAATGGCAGAGGCCCAAAGCCCACGAAAAAGCTCGATATTTTGAGAGCGAGTCGTTCAGAAGAATATCCCAACGCGATCGATCGAGCAACCCACAGAAGCGATTAGTCGAGACTAATCGCCAAAAGGGATCGATGCCGAGTCTTTCGACTCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTGTCGATGGCAAGGTATACGACGTAACATCATATTTGGATGAGCATCCCGGTGGAGATGATGTTATTATCGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGACGCCAGAGAGCTGATGGAGAAGTTCTACATCGGCGTGCTTGATGAGTCTTCCTCAGCAAGCCCAGAACTCGAAACGAAGCGACCAGACGGTTATGCAGCTCAGGTTCAGGCCTTGACAAAGCAATACTGGGCGGCTCCTGTTGCAATACTTGTACTGTATGATAGAGAACTTGTTATTGTTGAGAAGATGCAGGCCAGGCCAGTTTGTTCACAGGCTGTTCAGAAAAATACTCTGTACGTCGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTTCACGCCGCCTTCATTCCCTTCGGCGACATCAAAGACGTCAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTTACTTTCTTGGAAAAGGAAGACGCGTCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCCGCCCAGCCTATTTGGGCGGATGCGGATACATGGTTTGAGAGGCAGCAACAAGAGGAGGAAATGCAACGCATTCAGGCTGAGAACCGAGCAACTATGCAGGCTGCTGAGGAGCTGCACAGGAAGAAACTAGCCCAGGAGCGGGAAGGGGAAAAAGAAGACGAGATGGACACCAAGGATGATCCCATGGCTAAGGCTGAAGCCGAGGTTTTAAGACAGAACAGCTAA 1116 51.08 MFNWASLQIRPNDGYPYGAAKEWQRPKAHEKARYFESESFRRISQRDRSSNPQKRLVETNRQKGSMPSLSTLYSIQEVSQHSSNDDCWIIVDGKVYDVTSYLDEHPGGDDVIIAATGRDATDDFEDAGHSKDARELMEKFYIGVLDESSSASPELETKRPDGYAAQVQALTKQYWAAPVAILVLYDRELVIVEKMQARPVCSQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRATMQAAEELHRKKLAQEREGEKEDEMDTKDDPMAKAEAEVLRQNS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6905129 6910364 + Lag0004774.1 Lac6g0805 610574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0805 371 Coils Coil 311 338 - -
Lac6g0805 371 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 101 108 IPR018506 GO:0020037(InterPro)
Lac6g0805 371 Gene3D - 193 344 IPR012677 -
Lac6g0805 371 MobiDBLite consensus disorder prediction 331 363 - -
Lac6g0805 371 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 70 146 IPR001199 -
Lac6g0805 371 SMART rrm1_1 209 282 IPR000504 GO:0003723(InterPro)
Lac6g0805 371 CDD RRM_PPIE 210 284 IPR034168 GO:0003723(InterPro)
Lac6g0805 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723(InterPro)
Lac6g0805 371 FunFam Peptidyl-prolyl cis-trans isomerase 200 353 - -
Lac6g0805 371 MobiDBLite consensus disorder prediction 331 371 - -
Lac6g0805 371 Pfam Cytochrome b5-like Heme/Steroid binding domain 76 146 IPR001199 -
Lac6g0805 371 Pfam RNA recognition motif 210 279 IPR000504 GO:0003723(InterPro)
Lac6g0805 371 PRINTS Cytochrome B5 signature 120 127 IPR001199 -
Lac6g0805 371 PRINTS Cytochrome B5 signature 95 105 IPR001199 -
Lac6g0805 371 PRINTS Cytochrome B5 signature 105 119 IPR001199 -
Lac6g0805 371 PRINTS Cytochrome B5 signature 133 145 IPR001199 -
Lac6g0805 371 MobiDBLite consensus disorder prediction 40 63 - -
Lac6g0805 371 SMART Cyt_b5_2 73 146 IPR001199 -
Lac6g0805 371 FunFam Cytochrome b5 type B 68 150 - -
Lac6g0805 371 SUPERFAMILY RNA-binding domain, RBD 205 295 IPR035979 GO:0003676(InterPro)
Lac6g0805 371 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 68 149 IPR036400 -
Lac6g0805 371 PANTHER ATPASE E1 202 370 - -
Lac6g0805 371 MobiDBLite consensus disorder prediction 40 54 - -
Lac6g0805 371 Gene3D - 67 151 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0805 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1655 Lac-Chr11:29761450 Lac6g0805 Lac-Chr6:6905129 9.60E-17 dispersed
Lac6g0805 Lac-Chr6:6905129 Lac7g0465 Lac-Chr7:3688907 2.30E-26 dispersed
Lac10g0032 Lac-Chr10:380064 Lac6g0805 Lac-Chr6:6905129 4.90E-08 transposed
Lac9g2401 Lac-Chr9:43127052 Lac6g0805 Lac-Chr6:6905129 7.90E-09 transposed
Lac10g0147 Lac-Chr10:1115330 Lac6g0805 Lac-Chr6:6905129 3.20E-12 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
Lac4g0070 . 1 134 NADPH P450 reductases AT5G53560 79.9 3.7e-59 224.9
Lac7g0465 . 1 133 NADPH P450 reductases AT5G53560 66.9 8.3e-51 197.2
Lac12g2057 . 1 133 NADPH P450 reductases AT5G53560 66.2 9.1e-50 193.7
Lac11g2510 . 1 118 NADPH P450 reductases AT5G53560 62.7 1.0e-40 163.7
Lac7g0103 . 1 135 NADPH P450 reductases AT5G53560 54.8 8.9e-37 150.6
Lac7g0465 . 1 132 NADPH P450 reductases AT5G48810 64.9 2.6e-47 185.7
Lac12g2057 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.4e-47 185.3
Lac4g0070 . 1 134 NADPH P450 reductases AT5G48810 60.3 1.9e-45 179.5
Lac11g2510 . 1 118 NADPH P450 reductases AT5G48810 58.3 4.9e-38 154.8
Lac7g0465 . 22 133 NADPH P450 reductases AT2G32720 85.7 4.8e-51 198.0
Lac12g2057 . 22 133 NADPH P450 reductases AT2G32720 79.5 1.5e-47 186.4
Lac4g0070 . 22 133 NADPH P450 reductases AT2G32720 65.2 1.9e-39 159.5
Lac6g0805 . 66 184 NADPH P450 reductases AT1G26340 61.0 2.1e-38 156.0
Lac1g1605 . 78 357 NADPH P450 reductases AT5G17770 82.5 5.2e-132 468.0
Lac9g2955 . 31 283 NADPH P450 reductases AT5G17770 71.9 6.9e-108 387.9
Lac10g2390 . 2 250 NADPH P450 reductases AT5G17770 69.2 5.8e-107 384.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007837 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 0 34