Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0805 | ATGTTCAATTGGGCCAGTCTCCAGATTCGGCCCAATGACGGCTACCCGTATGGGGCAGCGAAGGAATGGCAGAGGCCCAAAGCCCACGAAAAAGCTCGATATTTTGAGAGCGAGTCGTTCAGAAGAATATCCCAACGCGATCGATCGAGCAACCCACAGAAGCGATTAGTCGAGACTAATCGCCAAAAGGGATCGATGCCGAGTCTTTCGACTCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTGTCGATGGCAAGGTATACGACGTAACATCATATTTGGATGAGCATCCCGGTGGAGATGATGTTATTATCGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGACGCCAGAGAGCTGATGGAGAAGTTCTACATCGGCGTGCTTGATGAGTCTTCCTCAGCAAGCCCAGAACTCGAAACGAAGCGACCAGACGGTTATGCAGCTCAGGTTCAGGCCTTGACAAAGCAATACTGGGCGGCTCCTGTTGCAATACTTGTACTGTATGATAGAGAACTTGTTATTGTTGAGAAGATGCAGGCCAGGCCAGTTTGTTCACAGGCTGTTCAGAAAAATACTCTGTACGTCGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTTCACGCCGCCTTCATTCCCTTCGGCGACATCAAAGACGTCAAGACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTTACTTTCTTGGAAAAGGAAGACGCGTCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCCGCCCAGCCTATTTGGGCGGATGCGGATACATGGTTTGAGAGGCAGCAACAAGAGGAGGAAATGCAACGCATTCAGGCTGAGAACCGAGCAACTATGCAGGCTGCTGAGGAGCTGCACAGGAAGAAACTAGCCCAGGAGCGGGAAGGGGAAAAAGAAGACGAGATGGACACCAAGGATGATCCCATGGCTAAGGCTGAAGCCGAGGTTTTAAGACAGAACAGCTAA | 1116 | 51.08 | MFNWASLQIRPNDGYPYGAAKEWQRPKAHEKARYFESESFRRISQRDRSSNPQKRLVETNRQKGSMPSLSTLYSIQEVSQHSSNDDCWIIVDGKVYDVTSYLDEHPGGDDVIIAATGRDATDDFEDAGHSKDARELMEKFYIGVLDESSSASPELETKRPDGYAAQVQALTKQYWAAPVAILVLYDRELVIVEKMQARPVCSQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRATMQAAEELHRKKLAQEREGEKEDEMDTKDDPMAKAEAEVLRQNS | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6905129 | 6910364 | + | Lag0004774.1 | Lac6g0805 | 610574 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0805 | 371 | Coils | Coil | 311 | 338 | - | - | |
Lac6g0805 | 371 | ProSitePatterns | Cytochrome b5 family, heme-binding domain signature. | 101 | 108 | IPR018506 | GO:0020037(InterPro) | |
Lac6g0805 | 371 | Gene3D | - | 193 | 344 | IPR012677 | - | |
Lac6g0805 | 371 | MobiDBLite | consensus disorder prediction | 331 | 363 | - | - | |
Lac6g0805 | 371 | ProSiteProfiles | Cytochrome b5 family, heme-binding domain profile. | 70 | 146 | IPR001199 | - | |
Lac6g0805 | 371 | SMART | rrm1_1 | 209 | 282 | IPR000504 | GO:0003723(InterPro) | |
Lac6g0805 | 371 | CDD | RRM_PPIE | 210 | 284 | IPR034168 | GO:0003723(InterPro) | |
Lac6g0805 | 371 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 286 | IPR000504 | GO:0003723(InterPro) | |
Lac6g0805 | 371 | FunFam | Peptidyl-prolyl cis-trans isomerase | 200 | 353 | - | - | |
Lac6g0805 | 371 | MobiDBLite | consensus disorder prediction | 331 | 371 | - | - | |
Lac6g0805 | 371 | Pfam | Cytochrome b5-like Heme/Steroid binding domain | 76 | 146 | IPR001199 | - | |
Lac6g0805 | 371 | Pfam | RNA recognition motif | 210 | 279 | IPR000504 | GO:0003723(InterPro) | |
Lac6g0805 | 371 | PRINTS | Cytochrome B5 signature | 120 | 127 | IPR001199 | - | |
Lac6g0805 | 371 | PRINTS | Cytochrome B5 signature | 95 | 105 | IPR001199 | - | |
Lac6g0805 | 371 | PRINTS | Cytochrome B5 signature | 105 | 119 | IPR001199 | - | |
Lac6g0805 | 371 | PRINTS | Cytochrome B5 signature | 133 | 145 | IPR001199 | - | |
Lac6g0805 | 371 | MobiDBLite | consensus disorder prediction | 40 | 63 | - | - | |
Lac6g0805 | 371 | SMART | Cyt_b5_2 | 73 | 146 | IPR001199 | - | |
Lac6g0805 | 371 | FunFam | Cytochrome b5 type B | 68 | 150 | - | - | |
Lac6g0805 | 371 | SUPERFAMILY | RNA-binding domain, RBD | 205 | 295 | IPR035979 | GO:0003676(InterPro) | |
Lac6g0805 | 371 | SUPERFAMILY | Cytochrome b5-like heme/steroid binding domain | 68 | 149 | IPR036400 | - | |
Lac6g0805 | 371 | PANTHER | ATPASE E1 | 202 | 370 | - | - | |
Lac6g0805 | 371 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
Lac6g0805 | 371 | Gene3D | - | 67 | 151 | IPR036400 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1655 | Lac-Chr11:29761450 | Lac6g0805 | Lac-Chr6:6905129 | 9.60E-17 | dispersed | |
Lac6g0805 | Lac-Chr6:6905129 | Lac7g0465 | Lac-Chr7:3688907 | 2.30E-26 | dispersed | |
Lac10g0032 | Lac-Chr10:380064 | Lac6g0805 | Lac-Chr6:6905129 | 4.90E-08 | transposed | |
Lac9g2401 | Lac-Chr9:43127052 | Lac6g0805 | Lac-Chr6:6905129 | 7.90E-09 | transposed | |
Lac10g0147 | Lac-Chr10:1115330 | Lac6g0805 | Lac-Chr6:6905129 | 3.20E-12 | wgd |
Pathway information
