Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0806 | ATGTCATCACCAAACTTCAACTCTCTTCTTCTCCATTTCCCTTCTTCCATTTCTCAAAGCTTCGAAGCCCTTTTCTTAGCCCTTCTCCTTCTCTCCATTTTCGCCTTCTTCCTCCACCCGGGCGGCCTGGCTTGGGCCCTTTCCAAGTCCAGAACCGCCGCCTCCGTCGCCGCCATCCCGGGCCCCGCGGGGCTCCCATTCATCGGCCTCCTCCACGTCTTCACTCTCTCCGCCCCTCACAGAGCCCTCGCCGCCCTCTCCAAGAAATTCAAAGCCCACCCTCTGATGGCCTTCTCCGTTGGGCTCACCAGGTTCGTGATTTCCAGCAACCCTGATTTCGCCAAGGAGATTCTGAGCAGCGCTTCCTTCGCCGACAGACCCGTGAAGGAATCTGCTTACGAACTGCTTTTCCACAGAGCAATGGGGTTTGCTCCTTACGGTGAGTACTGGAGGAATTTGAGAAGGATTTCAGCTACTTACATGTTTAGTCCTAAGAGAATAGCTGGTTTTGAAGGGTTTAGAAGGGATGTGGGAGTGAAAATGATCGGGGAGATTGAGAAATCCATGGGTTTCAAAGGGGAAGTTAGAGTTAAGGAGATTCTTCATTTTGGGTCTTTGAATAATGTGATGATGACTGTTTTTGGAAAGTGTTATGAGTTTGGTGGAATGGATGAAGGGGTTGAGCTTGAGGAGTTGGTCAGTGAAGGGTATGAGTTGCTTGGGATTTTCAATTGGAGTGACCATTTTCCCTTTTTGGGTTGGTTGGATTTGCAAGGTGTGAGGAAAAGGTGTAGATGTTTGGCTTCTAAGGTCAATGTTTTTGTGGGAAAAATCATTGAGGAACATAGAATGAAGAGGAAGATCAAGGGACACCAACAACAACAACTTGACCAAGAACACAATAGAGACTTTGTTGATGTCCTACTTGACTTGGAAGAACATGACAAACTCTCAGATTCTGACATGATTGCTGTTCTTTGGGAAATGATTTTCCGAGGAACAGACACAGTGGCCATACTTCTGGAGTGGATTTTAGCCCGAATGGTTCTCCACCCAGAAATCCAAACCAAAGCCCAAGATGAAATCGATTCAGTAATCGGCAAAAACTTCAGACCCATTACAGATTCCGACATCCAGAATCTCCCCTTTCTTCAGTCGATCGTGAAGGAGTGCTTGAGAATGCATCCGCCAGGGCCGCTGCTGTCGTGGGCGAGGCTGGCGGTGGCGGACGTGCACGTTGGGGGGAGGCTGATTCCGGCGGGCACGACGGCGATGGTGAACATGTGGGCGATAACGCACGACGAGAGGGTCTGGGCAGAGGCTGAGAAGTTCGAGCCGAATCGATTCATGGAAGAGGAAGTGAGTGTGATGGGAAGTGATTTGAGATTGGCTCCGTTTGGGGCAGGGAGAAGAGTCTGCCCGGGAAAGGCAATGGGATTGGCCAGTGTTCATCTCTGGTTGGCTCAGCTGCTTCAAGCTTTCAAATGGGTTCCTTCTGAAGAGGGCAGCAATGGAGTTGATTTATCAGAGTGCCTTAAACTCTCCCTGGAAATGGAAACTCCATTGGTGTGCAGAGCTGTGGCTAGGGTTGGTTGA | 1596 | 49.87 | MSSPNFNSLLLHFPSSISQSFEALFLALLLLSIFAFFLHPGGLAWALSKSRTAASVAAIPGPAGLPFIGLLHVFTLSAPHRALAALSKKFKAHPLMAFSVGLTRFVISSNPDFAKEILSSASFADRPVKESAYELLFHRAMGFAPYGEYWRNLRRISATYMFSPKRIAGFEGFRRDVGVKMIGEIEKSMGFKGEVRVKEILHFGSLNNVMMTVFGKCYEFGGMDEGVELEELVSEGYELLGIFNWSDHFPFLGWLDLQGVRKRCRCLASKVNVFVGKIIEEHRMKRKIKGHQQQQLDQEHNRDFVDVLLDLEEHDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPEIQTKAQDEIDSVIGKNFRPITDSDIQNLPFLQSIVKECLRMHPPGPLLSWARLAVADVHVGGRLIPAGTTAMVNMWAITHDERVWAEAEKFEPNRFMEEEVSVMGSDLRLAPFGAGRRVCPGKAMGLASVHLWLAQLLQAFKWVPSEEGSNGVDLSECLKLSLEMETPLVCRAVARVG | 531 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6920298 | 6922428 | - | Lag0004775.1 | Lac6g0806 | 610575 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0806 | 531 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 466 | 475 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac6g0806 | 531 | CDD | CYP78 | 91 | 522 | - | - | |
| Lac6g0806 | 531 | SUPERFAMILY | Cytochrome P450 | 59 | 529 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | Gene3D | Cytochrome P450 | 45 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | Pfam | Cytochrome P450 | 60 | 502 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PANTHER | CYTOCHROME P450 78A7-RELATED | 24 | 526 | IPR051996 | - | |
| Lac6g0806 | 531 | FunFam | Cytochrome P450 78A5 | 51 | 529 | - | - | |
| Lac6g0806 | 531 | PRINTS | P450 superfamily signature | 473 | 484 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PRINTS | P450 superfamily signature | 464 | 473 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PRINTS | P450 superfamily signature | 332 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PRINTS | P450 superfamily signature | 386 | 397 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PRINTS | E-class P450 group I signature | 463 | 473 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PRINTS | E-class P450 group I signature | 385 | 403 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PRINTS | E-class P450 group I signature | 427 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PRINTS | E-class P450 group I signature | 341 | 367 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PRINTS | E-class P450 group I signature | 473 | 496 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g0806 | 531 | PRINTS | E-class P450 group I signature | 321 | 338 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0177 | Lac-Chr10:1350135 | Lac6g0806 | Lac-Chr6:6920298 | 1.30E-192 | dispersed | |
| Lac13g0055 | Lac-Chr13:387837 | Lac6g0806 | Lac-Chr6:6920298 | 1.20E-155 | dispersed | |
| Lac4g1262 | Lac-Chr4:30575896 | Lac6g0806 | Lac-Chr6:6920298 | 1.50E-13 | dispersed | |
| Lac6g0806 | Lac-Chr6:6920298 | Lac9g0389 | Lac-Chr9:6960956 | 2.80E-134 | dispersed | |
| Lac6g0806 | Lac-Chr6:6920298 | Lac12g1270 | Lac-Chr12:18458668 | 2.20E-139 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g0806 | K20619 | - | csv:101221468 | 863.603 |